Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq3624 214 5e-51 >seq3624 Length=1447 Score = 214 bits (236), Expect = 5e-51 Identities = 380/547 (69%), Gaps = 8/547 (1%) Strand=Plus/Minus Query 18570 ATGAATCGCCACAGATAATCTAGACACTTCCGAGCCGCTGATAATATTGGTTTTCGTATT 18629 |||||||||| | | | |||||||||||| |||||| || ||| | | | |||| | | Sbjct 1369 ATGAATCGCCCCGGCTTATCTAGACACTTTTGAGCCGTTGGGAATGTCGCTGTTCGAACT 1310 Query 18630 CAGTTGGTGGCATA-TGATCACTC-GAACCATGCCGACGCTTACTGTTATAAAACATTTC 18687 | || | ||| | | | | || ||| || |||| ||| || |||||||| Sbjct 1309 CTACAGGGG--ATAGTCCTGCCGCCGATGAATGACGGCGCTGTGAGTTGTAGAACATTTC 1252 Query 18688 GATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTAT 18747 |||||| | || | || | | || || || || ||| | |||| | | || Sbjct 1251 GATGTAGTTGAAGACGTCCGCTCTCGCGTCATCACGGGTTGCATAGACCCGCCTGCGGAT 1192 Query 18748 CCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACC 18807 ||||| || || || || ||||| || || || || || |||||||| || ||||| || Sbjct 1191 GCGTTCGCGCTTGAGCAGTTGGAAGAAGCTCTCGGCCACAGCGTTGTCGTGGCAGTTGCC 1132 Query 18808 GCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAGCT 18867 || |||||||| |||| |||| ||| |||||| | ||||||||| | || Sbjct 1131 ACGCCGGCTCATGCTGCTGACCAGGTTGTGCTCGCGCAGGAAGGTCTGCCACTCGTGGCC 1072 Query 18868 TGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTGAGGATTACGTCGCCA 18927 |||| |||||| ||||||||| ||| |||||| || | | || | || ||||| Sbjct 1071 TGTGAACTGACAGCCTTGATCGGAACGAACCATGACAGGTGCACGCGGCTGGCGGCGCCA 1012 Query 18928 CACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCCGGGGCTGC--ATTGAC 18985 | |||||||| ||||||| ||||| | | | |||| | |||||| || ||| Sbjct 1011 TAGCGCCATCAGCAGTGCATCGAGGACCAGGCTCGT-GTCAAT-GCGGCTGCCCATGGAC 954 Query 18986 CAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCG 19045 ||||| | || | ||| |||||||| || || || || ||||| ||||||||||||||| Sbjct 953 CAGCCCACTACCTGGCGTGAGAACAGATCGACCACAACCGCCAGGTACAGCCAGCCTTCG 894 Query 19046 TGAGTCCGGATGTAGGTGATGTCCGTTACCCAACGCTCATCCGGTGCTTCCGAGTTGAAC 19105 || || ||||||||||||||||| || |||||| || || || | ||| |||||| Sbjct 893 TGGGTTCGGATGTAGGTGATGTCAGTGACCCAAGACTGATTGGGCTCATCCACCTTGAAC 834 Query 19106 TGCCGCT 19112 || |||| Sbjct 833 TGACGCT 827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127096172459040