Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq25 154 1e-32 seq11 123 2e-23 >seq25 Length=1288025 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| |||| ||| || || || || || || ||||| || || ||||||||||| | Sbjct 1056829 TCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAGA 1056770 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| ||| ||| || || |||||||||||| | ||||| | |||||||| || || Sbjct 1056769 CAAGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTGG 1056710 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| ||||| || ||||| ||| || | || ||| | || | ||| |||||| | || | Sbjct 1056709 AATGCCCTCCTTATCTTG-AATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAA 1056651 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | ||||| || || || |||||||| || || || ||||| |||||||| || Sbjct 1056650 CCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCATCTT 1056599 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| ||||| || || |||||||| ||||||| || || || Sbjct 1060202 ACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCC 1060143 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | || | | ||||| || || || || || || || Sbjct 1060142 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTT 1060083 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| | || | ||||| || | || ||||| || || || Sbjct 1060082 GTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGAT 1060023 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || ||||| || || || |||||||| Sbjct 1060022 GGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 29681 TACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||| ||||||||||| |||||| | |||||| |||| | ||||||||| | || ||| Sbjct 1057734 TACCTTCTTTGTCTTG-AATTTTAGCCTTGACATTTTCAATTGTGTCAGAAGGCTCAACT 1057676 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || |||||||| || || || || || |||||||| Sbjct 1057675 TCAAGAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 1057629 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 29681 TACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||| ||||||||||| ||| || | ||| || | || | |||||||||| |||| ||| Sbjct 1057343 TACCTTCTTTGTCTTG-AATCTTGGCTTTAACGTTCTCGATAGTGTCAGAAGGTTCAACT 1057285 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || ||||| | |||||||| || |||||||| Sbjct 1057284 TCGAGAGTGATGGTCTTTCCAGTAAGAGTTTTAACGAAAATCTGCAT 1057238 >seq11 Length=2187803 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| |||||||| || || | | || || ||| || ||||||||||||||| | | Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716 |||||| ||||| || || || ||||| || |||||||| | |||| |||||| ||| Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||||| ||| | || || ||||| || || || || || || | ||| || || | Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 29777 ATATCTGCATTTT 29789 | ||||||||||| Sbjct 911142 AGATCTGCATTTT 911130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385194852461226