Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq25 131 2e-25 seq18 100 3e-16 seq11 95.1 1e-14 >seq25 Length=1288025 Score = 131 bits (144), Expect = 2e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | |||||||| ||||| || |||||||| | | | | ||| || || | Sbjct 1060192 AAATGAAGAGTGGACTCCTTCTGAATGTTGTAATC--CGAAAGAGTACGTCCATCTTCAA 1060135 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || || |||| || ||||||||||| |||||||| ||||||||||| || Sbjct 1060134 GTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGGA 1060075 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| |||| | ||||| ||||| | ||||| || |||| ||||| |||||| | Sbjct 1060074 TCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTTTC 1060015 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || |||||||||||||| Sbjct 1060014 CTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 >seq18 Length=1446981 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| || || | |||||| || || ||||| | ||||| ||||||||||||||| || Sbjct 597999 CTCTTCTGGAGAGCTGTATTCCACAATCTCTGTGCACAAATTGCTGCATTTGATGGTACC 597940 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || |||| |||||| ||||| |||||| || |||||||||| ||||| || ||| Sbjct 597939 CAAATTCTGTTGATTCGACTTGCGGTTGCAGGCATCCTTGTACAAGATGTATGGGGTGCC 597880 Query 148970 AGTTTCCACCTGCGTTTC 148987 |||||| | |||| ||| Sbjct 597879 AGTTTCAATTTGCGATTC 597862 >seq11 Length=2187803 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || || ||||| || | || | ||||||||||| |||||||| ||||||||| Sbjct 911287 TCTTCAAGTTGTTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTG 911228 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| ||| ||||| | || | ||||| | ||||| || || | ||||| | Sbjct 911227 TCTTGGATTTTTGCCTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATG 911168 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || || ||||| |||||||| Sbjct 911167 GTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 911133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483389462246640