Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 104 6e-17 seq18 87.8 4e-12 >seq5 Length=2511979 Score = 104 bits (114), Expect = 6e-17 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATT--CAAGAT-GATTCCGCTAATTTTTCTACA 131857 |||||||| |||||||| || || |||||| ||| | ||| | || | | | Sbjct 2472126 AAGAAAGCTGAATGGGCAATGAAGTGGATTGGCAATAAAGATGCACCTTACAGTGA---A 2472070 Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| | || |||||||| || ||||| || ||||| || || | || |||||| Sbjct 2472069 AGAATCGTTGCTTTTGCCGCAGTGGAAGGAATTTTCTTCTCTGGGTCCTTTGCAGCTATC 2472010 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 ||||||||||| ||||| || ||||||||||| | | || || ||| || | ||||| Sbjct 2472009 TTTTGGCTTAAAAAGCGAGGTTTGATGCCTGGCTTGACCTTCTCAAATGAACTGATCTCA 2471950 Query 131978 AGAGATGAAGCATTGCATACTGAATTTGC 132006 |||||||| | ||||||||||| || || Sbjct 2471949 AGAGATGAGGGTTTGCATACTGATTTCGC 2471921 >seq18 Length=1446981 Score = 87.8 bits (96), Expect = 4e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 110755 CATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA 110814 ||||||| ||||| | |||||||||||||| ||| | || || || | || | | Sbjct 597475 CATTTGCAATCTACTTGGAACCTTGGCATTCTGATGTGTTCGATTTTCTCGATTTGAAGA 597534 Query 110815 AAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAG 110874 ||||| || |||||| | | || |||||||||||||| || | |||||| | | Sbjct 597535 AAAATACCGGCAAAGAAGAAAATCGTGCGCGTGATTTATTTTACGCTCTCTGGATTCCCG 597594 Query 110875 ATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCAT 110930 || | || ||| ||||||| || ||||| ||||| || |||||||||||| Sbjct 597595 ATCTGTTTATGCGACGTGTTGAATCTGATGGCGATTGGTCACTGATGTGTCCTCAT 597650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186733941481746