Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq25 102 5e-17 seq11 89.7 3e-13 >seq25 Length=1288025 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| |||||| ||| || || ||||||||||| || Sbjct 1060214 ACCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGA 1060155 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | ||| ||||| |||||||| | ||||||||| || | || Sbjct 1060154 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGG 1060095 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || | || || | || | |||||| | || | Sbjct 1060094 GATTCCTTCCTTGTCTTGGATCTT-AGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAA 1060036 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| ||||| || || || || || ||||||||| Sbjct 1060035 CTTCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCATA 1059986 Score = 98.7 bits (108), Expect = 7e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| || ||||| || ||||| |||||| || |||||||||||||| Sbjct 1059589 ACCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGA 1059530 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || || || || ||||| |||||||||||||| | || Sbjct 1059529 CAGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGG 1059470 Query 33642 CACACCT 33648 | |||| Sbjct 1059469 AATACCT 1059463 Score = 95.1 bits (104), Expect = 8e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||||||| | ||||| || ||||| ||| ||||| ||||||||||| || Sbjct 1059986 ACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTGA 1059927 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || |||| ||||| |||||||| || | |||||||||||| | || Sbjct 1059926 CAATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGG 1059867 Query 33642 CACACCT 33648 | |||| Sbjct 1059866 GATACCT 1059860 Score = 86.0 bits (94), Expect = 4e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||||||| || ||||| || || || ||| || || ||||||||||| || Sbjct 1058409 ACCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGA 1058350 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||| ||||| |||||||| || | |||||||||||| | || Sbjct 1058349 CAAGGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGG 1058290 Query 33642 CACACCT 33648 | |||| Sbjct 1058289 GATACCT 1058283 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 33532 AAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGT 33591 |||||||| |||||||||| || ||| || || |||||||| ||||| || || || Sbjct 1057227 AAACGTAATACCAAATGTAATGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGA 1057168 Query 33592 TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | || ||||||||||| ||||| || || | ||| |||||||| Sbjct 1057167 CCATCCTCCAATTGTTTGCCGGCGAAGATGAGACGTTGCTGATC 1057124 >seq11 Length=2187803 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| || || || || ||| | || || | |||||| || ||||| | Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||| |||||||| || | || | |||||| ||||| ||||| || | |||| Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTT-TGCCTTGACATTT 911204 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | |||||| | || || |||| ||||| || ||||| || | || || || Sbjct 911203 TCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACG 911144 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 911143 AAGATCTGCAT 911133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328683224469120