Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq25 96.9 8e-15 >seq25 Length=1288025 Score = 96.9 bits (106), Expect = 8e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | || |||||||| || |||||||||||||||||| | || ||| | ||||||||| Sbjct 1057903 CAACGCCTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCTTGTCGGATTACAAC 1057962 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||||| |||||||| |||||| | || ||| Sbjct 1057963 ATCCAGAAGGAGTCTACCCTTCACTTGGTCTTG 1057995 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 || ||||| || |||||| |||||||||| | ||| || ||||||||||| |||||||| Sbjct 1059491 ATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACTCTGTCCGATTACAACATCCAGAAA 1059550 Query 206359 GAGTCTACTCTTCACCTTGTTTTG 206382 ||||||||||||||| | || ||| Sbjct 1059551 GAGTCTACTCTTCACTTGGTCTTG 1059574 Score = 93.3 bits (102), Expect = 1e-13 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATCAGTAAAGCA 206252 ||||||||||| ||||| | ||||| || || ||||| | || | | ||||| Sbjct 1060011 ACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCAGACACCATTGAGAACGTCAAAGC- 1060069 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||||| ||||| || |||||||| || ||| || | ||||| || || ||||| Sbjct 1060070 TAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAGCAGCGTCTTATTTTTGCTGGAAA 1060129 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| | ||||||||| | ||| | | ||||||||| | ||||| ||||| |||||||| Sbjct 1060130 GCAACTTGAAGATGGACGTACTCTTTCGGATTACAACATTCAGAAGGAGTCCACTCTTCA 1060189 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||||||||| |||||||| |||| || || |||| |||||| | |||||||| Sbjct 1057610 AACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTC 1057551 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| ||||| || || || || ||| Sbjct 1057550 GAGCTGCTTTCCAGCGAAAATTAGACGCTGCTGA 1057517 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 ||| || | |||||| |||||||| ||||||| || || || | ||| || | |||||| Sbjct 1057995 CAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGTCCATC 1057936 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| |||||| || |||||||| || ||||| || Sbjct 1057935 TTCCAACTGCTTACCAGCGAAGATCAGGCGTTGCTG 1057900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181742273178306