Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq25 91.5 1e-13 >seq25 Length=1288025 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| ||||| || | | | ||||| || || |||||||| || || |||||| Sbjct 1058400 CAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGACAAGGTACG 1058341 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||||| ||||||||||||| | |||| |||||||| ||||| || || || ||| Sbjct 1058340 ACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCT 1058283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||||| || | | ||||| ||||| |||||||| || || ||||| Sbjct 1059977 CAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTGACAATGTACG 1059918 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||||| ||||||||||||| | |||| |||||||| ||||| || || || ||| Sbjct 1059917 ACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCT 1059860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || ||||||||||| || | ||||| |||||| Sbjct 1060195 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCTTCA 1060136 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | | | || |||||||| || || ||||| || ||||| || || Sbjct 1060135 AGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 1060076 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | || || | |||||| ||||||| || | ||||| Sbjct 1060075 ATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTTT 1060016 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | |||||||||||| Sbjct 1060015 CCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || || || || |||||||||| ||||||| || ||||||||||||||| || ||| Sbjct 1057230 CGTAAACGTAATACCAAATGTAATGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTA 1057171 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || | ||||| |||| |||| ||||| || ||||| || || |||||| Sbjct 1057170 CGACCATCCTCCAATTGTTTGCCGGCGAAGATGAGACGTTGCTGATCGGGTGGGATGCCT 1057111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||| | |||||| || | | ||||||| |||||||||||||||||| | ||||| Sbjct 1059186 GCGAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACC 1059127 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 |||||| | ||| ||||| | | || |||||||| ||||| ||||| || ||| Sbjct 1059126 ATCTTCCAACTGCTTACCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCT 1059072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476580303678960