Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq25 87.8 2e-12 >seq25 Length=1288025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 25169 AACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAA 25228 ||||| ||||| | ||||| || ||||| || || || | ||||| | || || || Sbjct 1056596 AACAAGATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGA- 1056654 Query 25229 GCCAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 ||| | |||||||||||| | || || || ||| ||||| ||||| || || || Sbjct 1056655 GCCTTCTGATACTATCGAGAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACC 1056714 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGC 25345 |||||||| | | || | | |||||||| || ||||||| | | | |||| Sbjct 1056715 AGATCAGCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCTTGTC--T 1056772 Query 25346 GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| || || || || ||||| ||| | || ||||| | | |||||||||||| Sbjct 1056773 GATTATAACATCCAGAAGGAATCTACCCTGCACTTAGTCCTCCGTCTGAGAGGAGGAA 1056830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445065546755520