Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq90 96.9 3e-15 seq25 87.8 2e-12 seq11 87.8 2e-12 >seq90 Length=518052 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 44250 GCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAACGGGTACGTAGGA 44309 ||||| ||||||||||| ||||||||||| || || || || | ||| ||||| || Sbjct 405609 GCCATATATCTGAACGATCGATACAGTTTGGATGGCCGAGATCCGAGCGGTTACGTTGGT 405550 Query 44310 TGTATGTGGTCCATTTGCGGTGTCCACGACAGGGCGTGGCGAGAGCTACCCATCTACGGC 44369 || ||||||||||| || ||| |||| |||| || ||| | | | ||| || Sbjct 405549 TGCATGTGGTCCATCTGTGGTATCCATGACATGGGATGGAAGCAACGAGATGTCTTTGGG 405490 Query 44370 AAAGTGCGCTACATGAACTACAACGGTTGCGTCA--GAAAGTTTGATGT 44416 ||| | ||||| ||||||||||| |||| |||| |||| ||||| || Sbjct 405489 AAAATTCGCTATATGAACTACAAAGGTT--GTCAACGAAAATTTGACGT 405443 >seq25 Length=1288025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || |||||| |||||||||||||| | | || || | || || Sbjct 1060195 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCTTCA 1060136 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || ||||| || | ||||||||||| | ||| | | |||||||| | Sbjct 1060135 AGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 1060076 Query 35648 ATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||| || |||| ||| | | ||||| || || || || | ||||| ||||| Sbjct 1060075 ATC-TTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTT 1060017 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || ||||| || |||||||| Sbjct 1060016 TCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| | ||| ||||| || | ||| ||| || || ||||||||||||| | Sbjct 1059588 CCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 1059529 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| || || || || |||||||| || | |||| Sbjct 1059528 AGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGA 1059469 Query 35630 A 35630 | Sbjct 1059468 A 1059468 >seq11 Length=2187803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | | || || | || || || || || || ||||| Sbjct 911323 CCTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAG 911264 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | ||| | | |||||||| ||| ||| ||| | | || Sbjct 911263 ATCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTT 911204 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | || ||||| | ||||| || |||||||||| || || || Sbjct 911203 TCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACG 911144 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 911143 AAGATCTGCATTTTG 911129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450764377304880