Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq25 122 9e-23 seq11 102 8e-17 seq18 84.2 2e-11 >seq25 Length=1288025 Score = 122 bits (134), Expect = 9e-23 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||||||||| || || | || | ||| || || |||||||| || ||||| || || | Sbjct 1056830 TTCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAG 1056771 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| ||| || || || ||||||||||| ||||| ||||||||||||||||| || Sbjct 1056770 ACAA-GGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGT 1056712 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || |||||||| || || || || | || || || | || Sbjct 1056711 GGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCA 1056652 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTT 134719 || || || || ||||| || || || || || || || || || ||||| ||||| Sbjct 1056651 ACCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCATCTTGTT 1056596 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| ||||| ||||||||||| || || || | || || || || Sbjct 1060189 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCTTCAAGTTGC 1060130 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| | ||||||||| || || || || ||||| || ||||| || || Sbjct 1060129 TTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGGATCTTA 1060070 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 |||||| || | ||||| |||| || || ||||| || |||||||| || || Sbjct 1060069 GCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTTTCCTGTC 1060010 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| Sbjct 1060009 AAGGTCTTCACGAAAATCTGCAT 1059987 >seq11 Length=2187803 Score = 102 bits (112), Expect = 8e-17 Identities = 142/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 134521 ATTCCTTT-TGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCA 134579 || ||||| |||||||||||||| | || | || || || |||||||| ||| Sbjct 911326 ATACCTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCA 911267 Query 134580 AAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACC 134639 || ||||| |||||||| || || || || ||||| || ||||| |||||| ||||| Sbjct 911266 AAGATCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACA 911207 Query 134640 GCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTA 134699 || | ||||| || | || || || || || ||||| ||||| || | || || Sbjct 911206 TTTTCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTG 911147 Query 134700 ACGAAAATTTGCATTTTG 134717 ||||| || ||||||||| Sbjct 911146 ACGAAGATCTGCATTTTG 911129 >seq18 Length=1446981 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 7510 ACTTTAAAAAACGGCTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACAC 7569 |||||| | || ||||||||||||||| | || || | |||||| ||| ||| Sbjct 596900 ACTTTAGAGAAATCCTACTTGTTGAAAATTGATGGTAAACCAGTGGAACGTCCTCAGCAC 596959 Query 7570 ATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACG 7629 || || || | ||| | || || ||||| || || || |||||||| ||| | |||||| Sbjct 596960 TTGATGATGAGAGTGTCAGTTGGTATTCATGGGGAGGATATTGACGCTGCCATTGAAACG 597019 Query 7630 TACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTT 7680 ||| | || |||| || ||| || || ||||| |||||| ||||| Sbjct 597020 TACAATTTGCTGTCGGAAAAGTGGTTCACTCATGCTTCTCCCACCCTGTTT 597070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505365637548720