Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 214 2e-50 seq18 158 2e-33 >seq5 Length=2511979 Score = 214 bits (236), Expect = 2e-50 Identities = 279/383 (73%), Gaps = 5/383 (1%) Strand=Plus/Plus Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT 39658 || ||||| ||||| | ||| ||||| ||| ||| | ||||||||||| || | | Sbjct 2471900 AAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGT 2471959 Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 || || || || || | |||||||| | ||| |||||||| |||||||| || || ||| Sbjct 2471960 TCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCA 2472019 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 || || ||||| ||||| || ||||| ||||| ||||| ||||| | ||| || | |||| Sbjct 2472020 AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAA 2472079 Query 39779 CTTGTATCATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGC 39835 || ||| |||| ||||||||| |||||| ||||||||||| | |||||| Sbjct 2472080 GGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGC 2472139 Query 39836 ATTGTTTCTATAGCATTAAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATC 39894 ||||| |||| |||||| || || ||| | ||| | ||| || | ||| || || Sbjct 2472140 ATTGTCTCTACAGCATTGAAAAG-CCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTC 2472198 Query 39895 TATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 || | ||| || |||||||| || ||||| ||||| || || || || || || || || Sbjct 2472199 AATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAA 2472258 Query 39955 ACATCTTGCTTCAGTAATTTGTA 39977 ||| | ||||||| || |||| Sbjct 2472259 ACAGCGAGCTTCAGGAACCTGTA 2472281 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/106 (79%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 40094 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTG 40153 |||||| |||| || | ||| ||||||||||| |||||||| || || ||||| |||||| Sbjct 2472520 TTGATACCTTT-GAAAGATCAACTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTG 2472578 Query 40154 TACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATC 40199 ||||| | ||| |||||| | || || || || || | ||||||| Sbjct 2472579 TACATTTGCCAGATATCATGGTACTGGATGGGGAATAGCACAAATC 2472624 >seq18 Length=1446981 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 |||||||| |||||| || ||||||||| ||| ||||||| || ||||||| ||| Sbjct 597703 GTATATAGGGCTTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGA 597644 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 ||||||| |||||| | ||||| | ||| ||| |||||| |||||||||||||| Sbjct 597643 CACATCAGTGACCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAG 597584 Query 69625 AGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCG 69684 ||||| ||| | ||| | | | ||||||||| || || |||||||| || | |||| Sbjct 597583 AGAGCGTAAAATAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCG 597524 Query 69685 AGAAACTCCATAATATCAGAATGCCATGGTTC 69716 ||||| || | | |||||||||||| ||||| Sbjct 597523 AGAAAATCGAACACATCAGAATGCCAAGGTTC 597492 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 |||| ||| | || ||||| || ||||||||||| ||||| || |||| |||||| ||| Sbjct 597075 GCATAAAACAGGGTGGGAGAAGCATGAGTGAACCACTTTTCCGACAGCAAATTGTACGTT 597016 Query 70057 TCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGC 70116 ||||| || | || |||||| | |||||| || | | || | ||||| || ||| Sbjct 597015 TCAATGGCAGCGTCAATATCCTCCCCATGAATACCAACTGACACTCTCATCATCAAGTGC 596956 Query 70117 TGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGT 70172 ||||| ||||| || | |||| || |||||||||| ||| ||||| || | ||| Sbjct 596955 TGAGGACGTTCCACTGGTTTACCATCAATTTTCAACAAGTAGGATTTCTCTAAAGT 596900 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 69745 TTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 |||||||| || || |||| || | || ||||| || || || | ||||| || | Sbjct 597389 TTATTTCCACCTTGGTCTACATAACGAGCTGTGTTGTTGTACACGCGAAGCATTGGGACT 597330 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 | ||| || || | ||||||||||| | |||||||||||| | |||||||| | | Sbjct 597329 AGACCGTTGGAAATTCCATTTGTTCCTGCGATATAACTTCCTGTAGCGCGAAT-GCAGTG 597271 Query 69865 ATAGAT-AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 | | ||||| || || || || ||| ||||| | ||||| | ||||| || || Sbjct 597270 GACGTTGAGACCAATACCACCAGCAGATTTGGAGATAATGGCACATTGCTTCAAAGTTTC 597211 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||| || || || || || |||||| ||||| |||||||||| || || Sbjct 597210 ATAAATTCCATCAATACTGTCATCTTTCATGGTAAGAAGAAAGCAACT 597163 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 68960 TTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAA 69019 ||||||| | || ||||||||| || ||||| || || || || |||||||||| Sbjct 598470 TTTCATATGTACCCAACTGTTCAGCGAGCTCACACGAAGCTTCCAAAGCGCCGTAATAAA 598411 Query 69020 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTA 69079 | ||||| ||||| | ||| || || ||| || ||| ||| || ||||| || | | Sbjct 598410 TGGTTTCAAAAATGTGCTTGTTTAGCAATTGCGCCTCTTCACTGTCAAATGGGTAGCGCA 598351 Query 69080 AAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGG 69125 |||||||| ||||| ||||| || ||||| ||||| || || || Sbjct 598350 TCAGAATAAAAGCATCCGCCAAGCCTTGAACTCCAATTCCAATTGG 598305 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| || || || || || || ||||||||| || |||| ||| | ||| Sbjct 598782 TGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAATCGAT 598723 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCA 68827 |||||||||||||||||||| ||||| || || || ||||||||||||| Sbjct 598722 TCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCA 598674 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || | ||| || |||||||| || |||| ||| || ||||| ||| | Sbjct 597974 ATCTCTGTGCACAAATTGCTGCATTTGATGGTACCCAAATTCTGTTGATTCGACTTGCGG 597915 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || ||||| |||||||| | || | || || ||||||||||| || ||||| |||| | Sbjct 597914 TTGCAGGCATCCTTGTACAAGATGTATGGGGTGCCAGTTTCAATTTGCGATTCAATAACA 597855 Query 69445 G 69445 | Sbjct 597854 G 597854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686864271137040