Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 163 2e-35 seq28 122 7e-23 >seq5 Length=2511979 Score = 163 bits (180), Expect = 2e-35 Identities = 253/358 (71%), Gaps = 5/358 (1%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 || ||||| || ||||| ||||| || ||||||||||| |||||||| || || |||||| Sbjct 2472273 CCTGAAGCTCGCTGTTTCTATGGTTTCCAAATTGCCATGGAAAATATCCACTCTGAAATG 2472214 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG-CATCGATTGTTTAA 44046 ||||| || || || || || || ||||| ||| |||| | || | || || || Sbjct 2472213 TACAGCCTGCTCATTGAAACTTATATCAAGGATTCCGCTGAGAGGACAAGGCTT-TTCAA 2472155 Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA-- 44104 ||| |||| ||| | ||| || | ||||| || ||||| | || ||||| Sbjct 2472154 TGCTGTAGAGACAATGCCTTGCATCGCTAAGAAAGCTGAATGGGCAATGAAGTGGATTGG 2472095 Query 44105 -AATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 ||| | ||| ||| | ||| || | || || ||||| | |||||||| ||||| Sbjct 2472094 CAATAAAGATGCACCTTACAGTGAAAGAATCGTTGCTTTTGCCGCAGTGGAAGGAATTTT 2472035 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||| || || || ||||| || || |||||| | || || ||||||||||||||||| || Sbjct 2472034 CTTCTCTGGGTCCTTTGCAGCTATCTTTTGGCTTAAAAAGCGAGGTTTGATGCCTGGCTT 2471975 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||| || |||||||| | || | ||||| || || ||| ||||| || ||| Sbjct 2471974 GACCTTCTCAAATGAACTGATCTCAAGAGATGAGGGTTTGCATACTGATTTCGCGTGC 2471917 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | || || || || || ||||| || ||||||||||||||||||||| | || Sbjct 2472622 TTTGTGCTATTCCCCATCCAGTACCATGATATCTGGCAAATGTACAAAAAAGCAGAAGCT 2472563 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGAT 43786 || |||||||| || |||||||||||| Sbjct 2472562 TCTTTTTGGACTGCTGAAGAAGTTGAT 2472536 >seq28 Length=1197646 Score = 122 bits (134), Expect = 7e-23 Identities = 121/157 (77%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||||||||| || || |||| || |||||| ||||| || || ||||||| Sbjct 525537 TGATGGCATTGCCGCCGTGCCATTGTTTGGCTCAGTTCTACGTAGCAAACGGCGAACTGT 525596 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | |||||| ||||||||||||| | ||| ||||| | || ||||| || |||||||| | Sbjct 525597 CTTGTCAAATGTATCAAAGATCTGCTGATATGGGTTTGGGTGTCCCTTTCAACATAGCTA 525656 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||||| || |||| || | |||||||| || || || Sbjct 525657 GTTATTCTTTGCTGACATGCATGATTGCTCATGTCAC 525693 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||||||||| || || |||| || |||||| ||||| || || ||||||| Sbjct 534832 TGATGGCATTGCCGCCGTGCCATTGTTTGGCTCAGTTCTACGTAGCAAACGGCGAACTGT 534773 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | |||||| ||||||||||||| | ||| |||| | || ||||| || |||||||| | Sbjct 534772 CTTGTCAAATGTATCAAAGATCTGCTGATGTGGGTTTGGGTGTCCCTTTCAACATAGCTA 534713 Query 41167 GTTATGCTCTGCTCACGTATATGATTGC 41194 ||||| || |||| || | |||||||| Sbjct 534712 GTTATTCTTTGCTGACATGCATGATTGC 534685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397430879041930