Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 >seq5 Length=2511979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||||||||||| || || ||||||||||||||| | || ||||| | ||| ||||| Sbjct 2471938 ACCCTCATCTCTTGAGATCAGTTCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTT 2471997 Query 122736 CTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAA 122794 || | |||| | ||||| ||| || ||||| |||||||| || || ||||| |||| Sbjct 2471998 TTTAAGCCAAAAGATAGCTGCA-AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAA 2472056 Query 122795 ACGCAAAAAGGCGTTCGGCG-AAGGAGCGAGACT-TTGCATCAAACCATTTCATTGCCCA 122852 | |||| | | ||| | |||| || | |||| ||| ||| ||||||||||| Sbjct 2472057 AAGCAACGATTCTTTCACTGTAAGGTGCATCTTTATTGC--CAATCCACTTCATTGCCCA 2472114 Query 122853 TTTCGCCTTCTT 122864 || || ||||| Sbjct 2472115 TTCAGCTTTCTT 2472126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627991287825600