Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 6e-13 >seq5 Length=2511979 Score = 89.7 bits (98), Expect = 6e-13 Identities = 185/269 (69%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| || | ||||| |||||| ||||||| || ||| || | || | | Sbjct 2472204 CTCATTGAAACTTATATCAAGGATTCCGCTGAGAGGACAAGGCTTTTCAATGCTGTAGAG 2472145 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 94790 ||| | || || || |||||||| || ||||| ||||||||| ||| | |||| Sbjct 2472144 ACAATGCCTTGCATCGCTAAGAAAGCTGAATGGGCAATGAAGTGGATTGGCAATAAAGAT 2472085 Query 94791 GCGTTCCTTTGC-TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 || |||| ||| || || | || ||||| || || || || |||||||||| Sbjct 2472084 GCA--CCTTACAGTGAAAGAATCGTTGCTTTTGCCGCAGTGGAAGGAATTTTCTTCTCTG 2472027 Query 94850 GTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 | ||||| ||| ||||| | |||||| || ||||||||| | ||||| || | |||| Sbjct 2472026 GGTCCTT-TGCAGCTATCTTTTGGCTTAAAAAGCGAGGTTTGATGCCTGGCTTGACCTTC 2471968 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGG 94937 || || || || ||||| | || ||||| Sbjct 2471967 TCAAATGAACTGATCTCAAGAGATGAGGG 2471939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583222990118640