Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 7e-12 >seq5 Length=2511979 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||| ||||||||||| ||||||||||| || || ||||| || ||||| Sbjct 2472060 GCTTTTGCCGCAGTGGAAGGAATTTTCTTCTCTGGGTCCTTTGCAGCTATCTTTTGGCTT 2472001 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 |||||||| || | ||||| ||| ||| ||||| || || ||||| || | || ||| Sbjct 2472000 AAAAAGCGAGGTTTGATGCCTGGCTTGACCTTCTCAAATGAACTGATCTCAAGAGATGAG 2471941 Query 60111 GG 60112 || Sbjct 2471940 GG 2471939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548489241879840