Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq121 82.4 8e-11 >seq121 Length=408865 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 118163 TTTATG-GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTT 118221 |||||| ||||| ||||| || ||| || || || || ||||| || || |||| Sbjct 300954 TTTATGTGTGGCTTCCCGCACATTGAGCACTTTTCCTTTGAGAGGAAAGACACCGTACTT 301013 Query 118222 GTCACGGCCCACAACGCTCAAG-CCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGG 118280 ||||||||| || || | |||| || | || ||| |||| ||| || ||||| ||||| | Sbjct 301014 GTCACGGCCGACCACAC-CAAGACCAGAAACAGCTAGGGACTTGGCTGAGTCTCCCTCAG 301072 Query 118281 TAATAATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCT 118340 | | ||| |||||||| ||| | | | || || || |||||| || || || | Sbjct 301073 TTAGAATGAGAGTGCAGTCGATCGAATGTTTTGTGCCAGCATTATTAGCGTCTTCTAGTT 301132 Query 118341 TCGGAACGCCC 118351 | || |||||| Sbjct 301133 TGGGGACGCCC 301143 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 118163 TTTATG-GTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTT 118221 |||||| ||||| ||||| || ||| || || || || ||||| || || |||| Sbjct 306920 TTTATGTGTGGCTTCCCGCACATTGAGCACTTTTCCTTTGAGAGGAAAGACACCGTACTT 306979 Query 118222 GTCACGGCCCACAACGCTCAAG-CCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGG 118280 ||||||||| || || | |||| || | || ||| |||| ||| || ||||| ||||| | Sbjct 306980 GTCACGGCCGACCACAC-CAAGACCAGAAACAGCTAGGGACTTGGCTGAGTCTCCCTCAG 307038 Query 118281 TAATAATAAGAGTGCACTCGGTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCT 118340 | | ||| |||||||| ||| | | | || || || |||||| || || || | Sbjct 307039 TTAGAATGAGAGTGCAGTCGATCGAATGTTTTGTGCCAGCATTATTAGCGTCTTCTAGTT 307098 Query 118341 TCGGAACGCCC 118351 | || |||||| Sbjct 307099 TGGGGACGCCC 307109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547180526722800