Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq25 168 8e-37 seq11 136 5e-27 seq5 89.7 6e-13 >seq25 Length=1288025 Score = 168 bits (186), Expect = 8e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || |||||||| || || |||||||||||| | | Sbjct 1056602 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCTTCT 1056661 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||| || ||||| || |||||||| ||||| ||||| ||| Sbjct 1056662 GATACTATCGAGAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAG 1056721 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| || || || || |||| ||||||| | | || ||||| Sbjct 1056722 CAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCTTGTCTGATTATAAC 1056781 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| |||||||| || || || ||||| | ||||| Sbjct 1056782 ATCCAGAAGGAATCTACCCTGCACTTAGTCCTCCGTCT 1056819 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || || || || || || || |||||| | Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || ||||| || || |||||||| ||||| ||||| |||||| Sbjct 1060047 GACACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 1060106 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| |||||||| || |||| ||||| || | || || || Sbjct 1060107 CAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAAC 1060166 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||||||||| | ||| | |||||||||||||| Sbjct 1060167 ATTCAGAAGGAGTCCACTCTTCATTTGGTCCTTCGTCTTCGCGGTGG 1060213 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| || ||||||||| ||||||| ||||||||||| || || |||| |||| Sbjct 1059464 GGTATTCCTCCCGATCAGCAGCGTTTAATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGT 1059523 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || | || || || |||| || || || |||||||| | ||||||||| | | Sbjct 1059524 ACTCTGTCCGATTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTTTAAGA 1059583 Query 27628 GGTGG 27632 ||||| Sbjct 1059584 GGTGG 1059588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || |||||||||||||| || ||||| || ||||| |||||||||| |||| Sbjct 1058683 GGTATCCCACCCGACCAGCAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGT 1058742 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||| | | || || || |||||||||| || |||||||| | || | || || || Sbjct 1058743 ACCTTGTCCGATTACAACATCCAAAAGGAGTCGACTCTTCACTTGGTTCTTCGCCTCCGA 1058802 Query 27628 GGTGG 27632 ||||| Sbjct 1058803 GGTGG 1058807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| || ||||||||||| ||||| ||||||||||| | || |||| |||| Sbjct 1059073 GGTATTCCTCCCGATCAGCAGCGTCTGATTTTCGCTGGTAAGCAGTTGGAAGATGGTCGT 1059132 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || ||| | ||||| || | |||||||| || || || || | || | || || ||| Sbjct 1059133 ACTCTATCCGACTACAACATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTCGCCTCCGC 1059192 Query 27628 GGTGG 27632 ||||| Sbjct 1059193 GGTGG 1059197 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || || ||||||||||||||||| ||||| ||||| ||||| |||| ||| Sbjct 1057503 GGTATTCCGCCCGATCAGCAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGATGGCCGT 1057562 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | | || || || ||||||| || || |||||||| | || | ||||| || Sbjct 1057563 ACTTTGTCTGATTACAACATCCAAAAAGAGTCGACTCTTCACTTGGTTCTCCGTCTCCGT 1057622 Query 27628 GGTGG 27632 ||||| Sbjct 1057623 GGTGG 1057627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || |||||||| || |||||||| |||||| | | Sbjct 1057629 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAGCCTTCT 1057688 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| |||| | |||||||||||||| ||||| || || Sbjct 1057689 GACACAATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGG 1057732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || || ||||||||||| || ||||| ||||| || || || |||| |||| Sbjct 1058284 GGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCGT 1058343 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 ||| | |||| || || |||| ||||| || || ||||| | ||||||||| Sbjct 1058344 ACCTTGTCAGATTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTCTTGCGT 1058397 >seq11 Length=2187803 Score = 136 bits (150), Expect = 5e-27 Identities = 148/195 (76%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || ||||| || || |||||||| ||| | Sbjct 911132 AATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTC 911191 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | |||| | ||||| ||||| || |||||||| || || ||||| ||||| Sbjct 911192 AGACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCTGACCA 911251 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | || |||||||| || ||||| || |||| ||||| ||| | ||||| || Sbjct 911252 GCAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACTCTATCTGACTACAA 911311 Query 27585 TGTCCA-AAAGGAAT 27598 | || ||||| || Sbjct 911312 CATTCAGAAAGGTAT 911326 >seq5 Length=2511979 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 ||||||||| ||||||||||||||||| |||||||| || |||| || ||||| Sbjct 2472060 GCTTTTGCCGCAGTGGAAGGAATTTTCTTCTCTGGGTCCTTTGCAGCTATCTTTTGGCTT 2472001 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 |||||||| || ||||||| || || | || || || || |||||||| | || ||| Sbjct 2472000 AAAAAGCGAGGTTTGATGCCTGGCTTGACCTTCTCAAATGAACTGATCTCAAGAGATGAG 2471941 Query 64846 GG 64847 || Sbjct 2471940 GG 2471939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570273429628320