Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq90 140 3e-28 seq25 127 2e-24 seq11 102 7e-17 >seq90 Length=518052 Score = 140 bits (154), Expect = 3e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACAC 135592 ||||||||||||||||| || |||||||| | | | |||| | ||| || || | | Sbjct 405669 ATGTATTGGGCAAAAAAAATCCTGGAATGGACAGAAACGCCGGAAGAAGCTCTGAGAATC 405610 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || |||| | | || ||| |||||||| ||||| || ||| | | || ||||| ||| Sbjct 405609 GCCATATATCTGAACGATCGATACAGTTTGGATGGCCGAGATCCGAGCGGTTACGTTGGT 405550 Query 135653 TGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGC 135712 || |||||||| || || ||| | || || ||||||||| | || | || ||||| Sbjct 405549 TGCATGTGGTCCATCTGTGGTATCCATGACATGGGATGGAAGCAACGAGATGTCTTTGGG 405490 Query 135713 AAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTT 135754 || ||||||||||||||||| | |||||| | |||||||| Sbjct 405489 AAAATTCGCTATATGAACTACAAAGGTTGTCAACGAAAATTT 405448 >seq25 Length=1288025 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || || | || || || ||||| || ||||| Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| || || |||||||| ||||| || || || || || Sbjct 1060047 GACACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 1060106 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||| | ||||| | || |||| ||||||||| Sbjct 1060107 CAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAAC 1060166 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | |||||||| | ||| | || ||||| || Sbjct 1060167 ATTCAGAAGGAGTCCACTCTTCATTTGGTCCTTCGTCTTCGCGGTGGTAT 1060216 Score = 120 bits (132), Expect = 3e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| ||||||||||| || ||| | || | |||||||||||||||||| || || Sbjct 1057111 AGGCATCCCACCCGATCAGCAACGTCTCATCTTCGCCGGCAAACAATTGGAGGATGGTCG 1057170 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | ||||| ||||||||||| |||||||| || ||||||||||| || ||||| || Sbjct 1057171 TACTCTGTCCGACTACAACATTCAGAAGGAGTCAACATTACATTTGGTATTACGTTTACG 1057230 Query 27209 GGGTGGCAT 27217 || ||||| Sbjct 1057231 CGGAGGCAT 1057239 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | |||||||||||||| ||||| ||| Sbjct 1059199 ATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATTACTCTTGAAGTTGAACCATCC 1059258 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| | || |||| || ||| ||||||||||| |||||||| || Sbjct 1059259 GACACCATCGAGAACGTTAAAGCGAAAATTCAAGATAAAGAAGGTAT 1059305 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| ||||| |||||| | || | ||||| ||||| ||||||| || Sbjct 1058283 AGGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCG 1058342 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | || ||||||||||| || |||||||| ||| | || ||||| ||||||||| | Sbjct 1058343 TACCTTGTCAGATTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTCTTGCGTTTGAG 1058402 Query 27209 GGGTGGCAT 27217 || || || Sbjct 1058403 AGGAGGTAT 1058411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || ||| | || || |||||||| ||||| ||| Sbjct 1058410 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAAGTTGAACCTTCC 1058469 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||| ||||||||| ||||| ||||| |||||||||||||| Sbjct 1058470 GACACGATTGAGAACGTCAAGGCTAAAATCCAAGACAAAGAAGG 1058513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| |||||| | || ||||||||||| || || || Sbjct 1057629 ATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAGCCTTCT 1057688 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||| | ||||| | ||||| |||||||||||||||||||| Sbjct 1057689 GACACAATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGG 1057732 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || || |||||||| |||||| | || | ||| || || || |||||||| || Sbjct 1059072 AGGTATTCCTCCCGATCAGCAGCGTCTGATTTTCGCTGGTAAGCAGTTGGAAGATGGTCG 1059131 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | ||||| |||||||||||||||||||| ||| | || |||||| | || | || Sbjct 1059132 TACTCTATCCGACTACAACATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTCGCCTCCG 1059191 Query 27209 GGGTGGCAT 27217 ||||| || Sbjct 1059192 CGGTGGTAT 1059200 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || || |||||||| ||||||||||| | ||| || || || ||||||| || Sbjct 1059463 AGGTATTCCTCCCGATCAGCAGCGTTTAATTTTCGCTGGTAAGCAGCTGGAAGATGGTCG 1059522 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | |||||||||||||| || || ||||| || | || ||||| |||||||| | Sbjct 1059523 TACTCTGTCCGATTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTCTTGCGTTTAAG 1059582 Query 27209 GGGTGGCAT 27217 ||||| || Sbjct 1059583 AGGTGGTAT 1059591 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| ||||| |||||| | || | ||||| ||||| ||||||| || Sbjct 1059860 AGGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCG 1059919 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | || ||||||||||| ||||||||||| || | || |||||| |||||||| | Sbjct 1059920 TACATTGTCAGATTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTTCTGCGTTTGAG 1059979 Query 27209 GGGTGGCAT 27217 || || || Sbjct 1059980 AGGAGGTAT 1059988 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||||| || || ||| | || ||||| ||||| ||||| || Sbjct 1057237 CATGCAGATTTTCGTTAAAACTCTTACTGGAAAGACCATCACTCTCGAAGTTGAACCTTC 1057296 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 ||| | || |||| || ||| || ||||||||||||||||| Sbjct 1057297 TGACACTATCGAGAACGTTAAAGCCAAGATTCAAGACAAAGAAGG 1057341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| ||||| ||| | || || ||||||||||| || || Sbjct 1059590 ATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACCATCACCCTTGAAGTGGAGCCATCG 1059649 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGG 27091 || | ||||||| || || |||||||||||||||||||| Sbjct 1059650 GATACAATTGAGAATGTTAAGGCCAAAATTCAAGACAAAGAAGG 1059693 >seq11 Length=2187803 Score = 102 bits (112), Expect = 7e-17 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || || ||||| || || || || Sbjct 911133 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTCA 911192 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| |||||| |||||||| ||||| || || || || || Sbjct 911193 GACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCTGACCAG 911252 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||||||| | ||||| | || | || || |||||| Sbjct 911253 CAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACTCTATCTGACTACAAC 911312 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 911313 ATTCAGAAAGG 911323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434890206414720