Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq3937 163 7e-36 >seq3937 Length=1273 Score = 163 bits (180), Expect = 7e-36 Identities = 538/817 (66%), Gaps = 37/817 (5%) Strand=Plus/Minus Query 6243 ACGTCGTATTCGGCGCCGCGGAACGGCACCCGCAGCCGGGCAGAAACCTTGCGTTTCTCC 6302 |||||||||||||||| | |||| |||||||||| | | |||||||| | | | Sbjct 1260 ACGTCGTATTCGGCGCGGTTGAACTCCACCCGCAGCTTGTCGCTCACCTTGCGCTCCACA 1201 Query 6303 GGTGCGGCAATGGCCAGTTCGC-GCATCGTCTCTGCAGGCGGTGCAATGCGCAGTTGCTC 6361 |||||| || |||||| | ||| | ||| | | || ||||| ||||||||||| Sbjct 1200 GGTGCGTGGGTGAGCAGTTCCCTGCACAG-CTCGGGACTGGGGGCAATCCGCAGTTGCTC 1142 Query 6362 AGGCTTGATCGTCATCCAG-GCCGCGTAGCGAGTGCGGTGATGTCGGGTGTGGATGGCGG 6420 |||| ||| |||||||| || ||| || || || || ||| |||| | || Sbjct 1141 GGGCTGGATGGTCATCCATTGCAGCGCT-CGCGTTTTGTTGTGGCGGCTGTGAACCTTGG 1083 Query 6421 TGGCGTTGTAGTGCCGCATCCAGCGTCCGGCCAGCCCGTTGATCTCGTCCAGAGTGCGCG 6480 |||||||| | |||||||| || || || | |||||| ||| ||||| || Sbjct 1082 TGGCGTTGAACCAGCGCATCCAACGGGCGACCCGAGCGTTGAGCTCTTCCAGGTTGT--- 1026 Query 6481 GTTTCTG-CATCAGTTGCAGGCCACTTTCAAACTCACGCTCGACGATGTTGTGGGCCTGC 6539 | ||| | | || ||| ||| || || || ||||| | |||| | |||||| | Sbjct 1025 -TGACTGGCTTGAGGCGCAAGCCGGCCTCGAATTCGCGCTCCAGAATGTCGCGGGCCTTC 967 Query 6540 TCGACCTGGCCCTTGGCGCGTGCGTTACCGACTTTGTTGATGATCAGTTCGATGCCCAGG 6599 || || ||| | || || ||||| || | || | ||| | | | ||||| Sbjct 966 TCCACGCTGCCGGTTGCACGGGCGTTCTCGGGTGCGTGGGCGATTTGCTGCACATCCAGG 907 Query 6600 GCGCGACACAGGTTGCGGAACATCGAGGAGGTCATGGCCGCACCGGGGTCGGTCATGATC 6659 ||| |||||| |||||| | ||| |||| || ||| |||| | Sbjct 906 CGGCGCAGCAGGTTCTTGAACATGCCGCTGGTGTTGGCACTGCCCATGTCCATCATCAAG 847 Query 6660 ATGAAGGGCACGCCATGGAACGGGTCGGTATCACCACGCT--TGACCATCGCGCTGATCA 6717 |||||||| || |||| |||||| ||| | || |||| ||| |||||| ||| | Sbjct 846 ATGAAGGGGACACCATAGAACGGATCGC---CCCCGCGCTGCTGA--ATCGCGGCGATGA 792 Query 6718 GTACATG--GCAGAGGTTCTCCGCGCTTTCAGCGCCGAGCACGTA-ATGCACGTACAGGG 6774 |||| || || ||| ||||||| || || | | ||| || ||| || | | | Sbjct 791 AG-CATGCTGC-GATGTTGGCCGCGCTCTCGCCGTCAAACACATACATGG-CGAAGATGC 735 Query 6775 TACCGCTGGTGTGGTCCGTGATGACGTAACGCCATAGGCGCTGTTTCTCGATGCGCTTGA 6834 |||||| |||| || || | |||| | ||| | |||| | | ||| |||||||||| Sbjct 734 AGCCGCTGTTGTGATCGGTAACCTCGTAGCTCCACACGCGCCGGTCCTCAATGCGCTTGA 675 Query 6835 GATTCTCTGGCTTGCCGTCGTAGAACTC---GGCCTTATTCATG-GCGCGCGC------G 6884 | |||| |||||| | || ||||| ||||| ||| || || | | Sbjct 674 GGTTCTTGGGCTTGTTCTTGTTGAACTTTTTGGCCTCCATCACCTGCAGGCCCATCTCAG 615 Query 6885 CCG---TCATTGGC--CAGGTAGAACTGAGTGGAGATCGAGGCGTCGATCTGCCAGACGT 6939 ||| | ||| | ||||||| || | | | | |||||||||||||||||||| Sbjct 614 CCGGGTTGGTTGTCTCCAGGTAGTACAGGACGCACAGGCTGGCGTCGATCTGCCAGACGT 555 Query 6940 GGTTGGGATGCAGACTGACCAACTCGACCGCTGGGGCCGGGCGCAGTAGTTGCTCAGGGT 6999 ||||||| ||||| ||| || ||| |||||| || || |||| || || ||||||| Sbjct 554 GGTTGGGGTGCAGGCTGCGCAGCTCCCGCGCTGGTGCAGGCTGCAGCAGCTGGTCAGGGT 495 Query 7000 GCAAGCCATAGGCACGCAAGGCCCGGCCTATAGCGCT 7036 ||| |||||| |||| || ||| |||| ||||| Sbjct 494 GCAGCCCATAGATGCGCATTGCTCGGGCTATGGCGCT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126568204975260