Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq28 107 2e-18 >seq28 Length=1197646 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 118537 CCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACA 118596 ||||| | |||||||||||| |||||| |||| || || |||| || ||||| ||| Sbjct 525696 CCTGTGACATGAGCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACA 525637 Query 118597 CCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACA 118656 |||| |||||| || || ||||| || |||| ||| ||||| || || |||||||| || Sbjct 525636 CCCAAACCCATATCAGCAGATCTTTGATACATTTGACAAGACAGTTCGCCGTTTGCTACG 525577 Query 118657 TAAAACTGA 118665 || |||||| Sbjct 525576 TAGAACTGA 525568 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118547 GAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCA 118606 ||||||||||| |||||| |||| || || |||| || ||||| ||||||| ||||| Sbjct 534683 GAGCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACACCCAAACCCA 534742 Query 118607 TGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGA 118665 || || ||||| || |||| ||| ||||| || || |||||||| || || |||||| Sbjct 534743 CATCAGCAGATCTTTGATACATTTGACAAGACAGTTCGCCGTTTGCTACGTAGAACTGA 534801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414450603252904