Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq25 178 3e-39 seq11 141 2e-28 >seq25 Length=1288025 Score = 178 bits (196), Expect = 3e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| | |||||||||||||| || || ||||| ||||||| ||| || Sbjct 1060207 CGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTA 1060148 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||| || ||||| || || || ||||| || || ||||||||||| | |||| Sbjct 1060147 CGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCT 1060088 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| ||| ||||| || |||||||| || ||||| ||||| Sbjct 1060087 TCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGG 1060028 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || | ||||| || || | |||||| Sbjct 1060027 GTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || || || || |||||||||||||| | | ||| | |||||| Sbjct 1056813 AGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAGACAAGGTACGACCATCT 1056754 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| | || || || || || |||| || ||||| || Sbjct 1056753 TCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTGGAATGCCCTCCTTATCT 1056694 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| || ||||| |||||||| || ||||| ||| Sbjct 1056693 TGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTC 1056634 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| ||||| | |||||| || Sbjct 1056633 TTGCCAGTCAATGTCTTGACAAAGATCTGCATCTT 1056599 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | |||||| || ||||| || |||||||| ||||||| | ||| | ||||||||| Sbjct 1057992 GACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGTCCATCTTC 1057933 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||||| || |||||||| |||||||| ||||| || |||| Sbjct 1057932 CAACTGCTTACCAGCGAAGATCAGGCGTTGCTGGTCTGGGGGAA 1057889 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||| ||||| || ||||| ||| ||||| ||||| |||||||| |||||| ||| Sbjct 1057341 CCTTCTTTGTCTTGAATCTTGGCTTTAACGTTCTCGATAGTGTCAGAAGGTTCAACTTCG 1057282 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| |||||||| || ||||| || || || | |||||| Sbjct 1057281 AGAGTGATGGTCTTTCCAGTAAGAGTTTTAACGAAAATCTGCAT 1057238 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||||||||| |||||||| |||||||| ||||| | || || | |||||||| Sbjct 1059571 GACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAGAGTACGACCATCTTC 1059512 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||||||||| || ||||| || | || || || || ||||||| Sbjct 1059511 CAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGAA 1059468 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| ||||||||||||||||| ||||| | | || | |||||| Sbjct 1057612 AGAACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCT 1057553 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||||||| || ||||| || || || || || || || |||| Sbjct 1057552 TCGAGCTGCTTTCCAGCGAAAATTAGACGCTGCTGATCGGGCGGAA 1057507 >seq11 Length=2187803 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || ||||| || || | || || | ||||||||| || || ||||| || |||| Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | || || ||||||||||| | ||||||||||| ||||| ||| || || |||| Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 |||||||||| || || ||||| || ||||| ||||| ||||| || ||||| || | Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 211105 ACACCTGCATTTT 211117 | | ||||||||| Sbjct 911142 AGATCTGCATTTT 911130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159074979420890