Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq25 120 2e-22 seq11 116 3e-21 >seq25 Length=1288025 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || |||||||| ||||| ||||||||||| | | Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || ||||| ||||| | || || || || Sbjct 1060047 GACACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 1060106 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || ||||| ||||| | ||| ||| | ||||||||| Sbjct 1060107 CAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAAC 1060166 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| | ||||| || Sbjct 1060167 ATTCAGAAGGAGTCCACTCTTCATTTGGT 1060195 Score = 86.0 bits (94), Expect = 4e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| || || ||||| || ||||||||||||||||| | | Sbjct 1057238 ATGCAGATTTTCGTTAAAACTCTTACTGGAAAGACCATCACTCTCGAAGTTGAACCTTCT 1057297 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715 |||||| | || || ||||| | || ||| |||||||||||| Sbjct 1057298 GACACTATCGAGAACGTTAAAGC-CAAGATTCAAGACAAAGAAGGT 1057342 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || ||||| || ||| | || || |||||||||||| |||| || | || ||| | Sbjct 1057118 CCACCCGATCAGCAACGTCTCATCTTCGCCGGCAAACAATTGGAGGATGGTCGTACTCTG 1057177 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || ||||| ||||||||||| || ||| | || || ||||| Sbjct 1057178 TCCGACTACAACATTCAGAAGGAGTCAACATTACATTTGGTATTACGTTTACGCGGAGG 1057236 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || ||||| |||||| | || |||||||| ||||| |||||||| | || Sbjct 1059860 AGGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCG 1059919 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831 || || ||||||||||| ||||| ||||| || | || || ||| | | ||| | Sbjct 1059920 TACATTGTCAGATTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTTCTGCGTTTGAG 1059979 Query 23832 AGGAGG 23837 |||||| Sbjct 1059980 AGGAGG 1059985 >seq11 Length=2187803 Score = 116 bits (128), Expect = 3e-21 Identities = 155/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| ||||| || || ||||| || || || || | Sbjct 911130 AAAATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 911189 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || |||||| ||||| |||||| | || || || Sbjct 911190 TCAGACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCTGAC 911249 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| || || ||||| ||||||||||| ||||| | ||| ||| || || ||| Sbjct 911250 CAGCAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACTCTATCTGACTAC 911309 Query 23788 AACATACAAAAAG----AGTCCA-CATTACATTT 23816 ||||| || |||| || ||| | |||||||| Sbjct 911310 AACATTCAGAAAGGTATAGCCCATCGTTACATTT 911343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337988236314488