Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq11 132 1e-25 seq25 123 6e-23 >seq11 Length=2187803 Score = 132 bits (146), Expect = 1e-25 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | ||||| || | | ||| | |||||||| || || || ||||| |||| Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | ||| || ||||| || || |||||||||||||||||||| ||| ||| ||| || Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||||||||||| | || || || | ||||| ||||| ||||||| || || | || Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 225704 ACACTTGCATTTT 225716 | | |||||||| Sbjct 911142 AGATCTGCATTTT 911130 >seq25 Length=1288025 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | || |||||||| || || || | |||||||| | | ||| Sbjct 1060207 CGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTA 1060148 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| ||||| || ||||| || || ||||| || || || ||| Sbjct 1060147 CGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCT 1060088 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| || || || ||||||||||| | || || || | Sbjct 1060087 TCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGG 1060028 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || ||||| || || | ||| | ||||| Sbjct 1060027 GTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 105 bits (116), Expect = 2e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| || |||||||||| |||||||| | |||||| | |||||| Sbjct 1057612 AGAACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCT 1057553 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| |||||||| || || || || || ||||||||||||||| Sbjct 1057552 TCGAGCTGCTTTCCAGCGAAAATTAGACGCTGCTGATCGGGCGGAATACCT 1057502 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 || ||| | ||| || || || || || |||| |||||||| | ||| || | ||||| Sbjct 1057995 CAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGTCCATC 1057936 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 ||| | |||||| ||||||||||| || ||||| ||||| || ||||||||| Sbjct 1057935 TTCCAACTGCTTACCAGCGAAGATCAGGCGTTGCTGGTCTGGGGGAATACCT 1057884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192451961519084