Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5 185 7e-42 >seq5 Length=2511979 Score = 185 bits (204), Expect = 7e-42 Identities = 255/354 (72%), Gaps = 2/354 (1%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 ||||| |||||| ||||||||| || ||||| |||||||| || || || || || Sbjct 2471918 CACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCATTTGAGAAGGTCAAG 2471977 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| ||||||| ||||||||||||||| ||||| ||||| |||||||| ||||| Sbjct 2471978 CCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAGGACCCAGAGAAGAAA 2472037 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATC-GGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || ||||| || |||||||| || || | || || || | || |||| | Sbjct 2472038 ATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGTGC-ATCTTTATTGCC 2472096 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| || | |||||| | |||||| || | ||| || ||||| | || ||| || Sbjct 2472097 AATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATTGTCTCTACAGCATT 2472156 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | | | | ||| | || | |||||||| || || || ||||| ||||| Sbjct 2472157 GAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCAATGAGCAGGCTGTACAT 2472216 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 |||||| || |||||||| || ||||| || || || || || || | |||||| Sbjct 2472217 TTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGAGCTTC 2472270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 5045 ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATC 5104 ||||||||||||| |||||||||| || ||||| |||||||||||||| ||| ||||| Sbjct 2472536 ATCAACTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTGTACATTTGCCAGATATC 2472595 Query 5105 AGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAGCGGTTC 5161 | | ||||| || || | || ||||||| | || ||||| ||| || ||||| Sbjct 2472596 ATGGTACTGGATGGGGAATAGCACAAATCGGCTGGGGTTAGAGCGAAGCAGGGGTTC 2472652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427022608596938