Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18 152 7e-32 seq5 143 4e-29 >seq18 Length=1446981 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 |||||||| ||| || || ||||||||| ||| ||||||| |||||||||| || Sbjct 597703 GTATATAGGGCTTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGA 597644 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||||| |||||| || ||||| | ||| ||| |||||| ||||| || ||||| Sbjct 597643 CACATCAGTGACCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAG 597584 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 ||||| ||||| ||| || | | || |||||| || || ||||| || || | |||| Sbjct 597583 AGAGCGTAAAATAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCG 597524 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 ||||| || | | |||||||||||| ||||| | || ||||| Sbjct 597523 AGAAAATCGAACACATCAGAATGCCAAGGTTCCAAGTAGATTGC 597480 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 |||| ||| | || ||||| ||||| || ||||| ||||| || || | |||||| ||| Sbjct 597075 GCATAAAACAGGGTGGGAGAAGCATGAGTGAACCACTTTTCCGACAGCAAATTGTACGTT 597016 Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 ||||| || | || || ||| |||||| || || | || | ||||| || ||| Sbjct 597015 TCAATGGCAGCGTCAATATCCTCCCCATGAATACCAACTGACACTCTCATCATCAAGTGC 596956 Query 78525 TGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 ||||| | ||| || | ||| || |||||||||||||| ||||| || ||||| Sbjct 596955 TGAGGACGTTCCACTGGTTTACCATCAATTTTCAACAAGTAGGATTTCTCTAAAGT 596900 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 77387 TTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTT 77446 |||||| || ||||| |||||||| || ||||||||||| ||||| ||||| | ||| Sbjct 598451 TTCAGCGAGCTCACACGAAGCTTCCAAAGCGCCGTAATAAATGGTTTCAAAAATGTGCTT 598392 Query 77447 ATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGC 77506 || || ||| || || ||| ||||| || || | | |||||||| ||||| || Sbjct 598391 GTTTAGCAATTGCGCCTCTTCACTGTCAAATGGGTAGCGCATCAGAATAAAAGCATCCGC 598332 Query 77507 TAATCCCTGAACTCCAATACCAATAGG 77533 || || ||||||||||| ||||| || Sbjct 598331 CAAGCCTTGAACTCCAATTCCAATTGG 598305 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| ||||| || || || ||||||||| || |||| ||| | ||| Sbjct 598782 TGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAATCGAT 598723 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 ||||| ||||||| |||||| ||||| ||||| || ||||||||||||| Sbjct 598722 TCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCA 598674 >seq5 Length=2511979 Score = 143 bits (158), Expect = 4e-29 Identities = 262/383 (68%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 48122 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAA 48181 ||| ||||| ||||| | || || |||||| ||| | ||| |||||||| || | Sbjct 2471899 CAAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAG 2471958 Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 ||| || || || || | || ||||| | || || ||||| |||||||| || || || Sbjct 2471959 TTCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGC 2472018 Query 48242 GAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 || || ||||| ||||| || ||||| || || ||||| || | ||| || | ||| Sbjct 2472019 AAAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTA 2472078 Query 48302 ACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 | || || || | |||||| |||||| ||||| ||||| | ||||| Sbjct 2472079 AGGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGG 2472138 Query 48359 CATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATC 48418 |||||| |||| |||||| || || | | ||| | ||| || | ||||| || Sbjct 2472139 CATTGTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTC 2472198 Query 48419 TATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 || | || || |||||||| ||||| |||||||| || || || || || || || || Sbjct 2472199 AATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAA 2472258 Query 48479 ACATCTCGCTTCTGTGATCTGTA 48501 ||| | ||||| | | ||||| Sbjct 2472259 ACAGCGAGCTTCAGGAACCTGTA 2472281 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/106 (81%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 |||||| |||| || | ||| ||||||||||| |||||||| || || ||||||||||| Sbjct 2472520 TTGATACCTTT-GAAAGATCAACTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTG 2472578 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATC 48723 ||||| | ||| |||||| ||| ||||| ||||| | ||||||| Sbjct 2472579 TACATTTGCCAGATATCATGGTACTGGATGGGGAATAGCACAAATC 2472624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694623768095040