Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 167 3e-36 seq18 125 1e-23 >seq5 Length=2511979 Score = 167 bits (184), Expect = 3e-36 Identities = 267/383 (70%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 46611 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAA 46670 ||| ||||| ||||| | || || |||||| ||| | || |||||||| || | Sbjct 2471899 CAAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAG 2471958 Query 46671 TTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGC 46730 ||| || || || || | |||||||| | || |||||||| |||||||| ||||| || Sbjct 2471959 TTCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGC 2472018 Query 46731 GAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA 46790 || || ||||| ||||| || ||||| || || || || || || | ||| || | ||| Sbjct 2472019 AAAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTA 2472078 Query 46791 ACTGGCATCATTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847 | ||||| |||| ||||||| | ||||| ||||| || || | ||||| Sbjct 2472079 AGGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGG 2472138 Query 46848 CATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATC 46907 |||||| |||| |||||| || || | | ||| | ||| || | ||| || || Sbjct 2472139 CATTGTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTC 2472198 Query 46908 TATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || | || || |||||||| || || || ||||| || || || || || || || || Sbjct 2472199 AATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAA 2472258 Query 46968 ACATCTTGCTTCAGTAATCTGTA 46990 ||| | ||||||| || ||||| Sbjct 2472259 ACAGCGAGCTTCAGGAACCTGTA 2472281 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/106 (79%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 |||||| |||| || | ||| ||||||||||| ||||| || || || ||||||||||| Sbjct 2472520 TTGATACCTTT-GAAAGATCAACTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTG 2472578 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATC 47212 ||||| | ||| |||||| | || ||||| || || | ||||||| Sbjct 2472579 TACATTTGCCAGATATCATGGTACTGGATGGGGAATAGCACAAATC 2472624 >seq18 Length=1446981 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||||| ||| || || ||||||||| ||| |||| || || ||||||| ||| Sbjct 597703 GTATATAGGGCTTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGA 597644 Query 76568 CACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCAT 76627 ||||||| |||||| || ||||| | ||| ||| |||||| ||||| || ||||| Sbjct 597643 CACATCAGTGACCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAG 597584 Query 76628 AGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCT 76687 ||||| ||||| ||| || | | | |||||| || || ||||| || || | ||| Sbjct 597583 AGAGCGTAAAATAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCG 597524 Query 76688 AGGAACTCCATAATATCAGAATGCCATGGTTC 76719 || || || | | |||||||||||| ||||| Sbjct 597523 AGAAAATCGAACACATCAGAATGCCAAGGTTC 597492 Score = 123 bits (136), Expect = 4e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 |||| ||||| || ||||| |||||||||||||| ||||| || || | |||||| ||| Sbjct 597075 GCATAAAACAGGGTGGGAGAAGCATGAGTGAACCACTTTTCCGACAGCAAATTGTACGTT 597016 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 ||||| | || || |||||| |||||| || || | || | ||||| || ||| Sbjct 597015 TCAATGGCAGCGTCAATATCCTCCCCATGAATACCAACTGACACTCTCATCATCAAGTGC 596956 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||||| ||||| || | ||| || |||||||||||||| ||||| || ||||| Sbjct 596955 TGAGGACGTTCCACTGGTTTACCATCAATTTTCAACAAGTAGGATTTCTCTAAAGT 596900 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| ||||| || || || ||||||||| || |||| ||| | ||| Sbjct 598782 TGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAATCGAT 598723 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCA 75830 ||||| ||||||| |||||| ||||| ||||| || ||||||||||||| Sbjct 598722 TCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCA 598674 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76748 TTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATA 76807 ||||| || || || |||| ||| | || ||||| || || || | | |||||| | Sbjct 597389 TTATTTCCACCTTGGTCTACATAACGAGCTGTGTTGTTGTACACGCGAAGCATTGGGACT 597330 Query 76808 ATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTA 76867 | ||||| || | ||||||||||| | ||||||||||| || ||||| | | Sbjct 597329 AGACCGTTGGAAATTCCATTTGTTCCTGCGATATAACTTCCTGTAGCGCGAAT-GCAGTG 597271 Query 76868 ATAGAT-AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTC 76926 | | || || || || || || ||| ||||| | ||||| | ||||| || || Sbjct 597270 GACGTTGAGACCAATACCACCAGCAGATTTGGAGATAATGGCACATTGCTTCAAAGTTTC 597211 Query 76927 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||| || || || ||||| ||||| ||||| |||||||||| || || Sbjct 597210 ATAAATTCCATCAATACTGTCATCTTTCATGGTAAGAAGAAAGCAACT 597163 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 75963 TTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAA 76022 |||| || || || || |||||| || || || || || || || |||||||||| Sbjct 598470 TTTCATATGTACCCAACTGTTCAGCGAGCTCACACGAAGCTTCCAAAGCGCCGTAATAAA 598411 Query 76023 TTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTA 76082 | ||||| ||||| | ||| || || |||||| || ||| ||||| || || | | Sbjct 598410 TGGTTTCAAAAATGTGCTTGTTTAGCAATTGCGCCTCTTCACTGTCAAATGGGTAGCGCA 598351 Query 76083 AAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 |||||||| ||||| || | || ||||||||||| ||||| || Sbjct 598350 TCAGAATAAAAGCATCCGCCAAGCCTTGAACTCCAATTCCAATTGG 598305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712888184027520