Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq3530 100 8e-17 >seq3530 Length=1545 Score = 100 bits (110), Expect = 8e-17 Identities = 171/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 9408 CTATTTCACTGGCGCAAGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAA 9467 || ||||| ||||||||||| | | | || ||| | || ||| || || || Sbjct 516 CTGTTTCAGTGGCGCAAGCTCGAGCGCCAGGGTGCCTTGACTGCTGTCTCTGCTGGCGAG 575 Query 9468 GCCGTGGTGCCTGCGTCCGAGTTGAGCGATGCGCTCAGGCAGATTCGTGAGCTACAACGG 9527 || |||||||| || || || || | ||| | | | |||| | || || ||| Sbjct 576 GCGGTGGTGCCCGCTTCTGAACTGGCAGCTGCACGCGCGGAGATCGCCAAACTTCAGCGG 635 Query 9528 ATGCTGGGCAAGAAGACGATGGAAGCCGAAGTCCTCAAAGAGGCCGTGGAGATAGCCCGC 9587 |||| ||||||||||| |||| ||| | ||||| || ||||||||| || ||| Sbjct 636 GTGCTCGGCAAGAAGACCTTGGAGAACGAGATACTCAAGGAAGCCGTGGAG-TA---CGC 691 Query 9588 TCGCGAAAA----TGGATTGCGCACTCACCCTTGTTGCCGGGGGACGGTCAGTGAAACTG 9643 | ||||| |||||||||| ||| ||||||||||| ||||||| ||||||||| | Sbjct 692 TGCAGAAAAAAAGTGGATTGCGCGCTCGCCCTTGTTGCCCGGGGACGACCAGTGAAACGG 751 Query 9644 GTCAGT 9649 ||| || Sbjct 752 GTCTGT 757 Score = 86.0 bits (94), Expect = 2e-12 Identities = 129/178 (72%), Gaps = 8/178 (4%) Strand=Plus/Plus Query 10238 GGCCTACAGCCAGTGACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGC 10297 ||||| |||| | | ||| || || | |||||||||||||| |||||||| |||||| Sbjct 1364 GGCCTCAAGCCCATCAACACACCTGTCTGTAGCCCGCAGAGCAATGGCATGGCCGAGAGC 1423 Query 10298 TTCGTTAAGACAATCAAGCGCGACTACGTGGCGCACATG--CCCAAGCCGGATCGAGAG- 10354 ||||| || || ||||| | ||||| ||||| | ||| || ||| | || | | Sbjct 1424 TTCGTGAATACCTTCAAGAGGGACTATGTGGCCCGGATGGACCTGAGC---AACGCGCGC 1480 Query 10355 ACAG-CCTTGCGCAACCTGACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCAC 10411 || | || || ||| ||| || ||||||||||| | ||||||| ||| |||||| Sbjct 1481 ACGGTACTGGCCCAA-CTGCCGGCGGCCTTCGAGCACTTCAACGAGGTGCACCCGCAC 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138356278976748