Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq5159 333 2e-86 >seq5159 Length=1004 Score = 333 bits (368), Expect = 2e-86 Identities = 429/587 (73%), Gaps = 5/587 (1%) Strand=Plus/Plus Query 61295 CCGGGGTAGCGCAGCAGGCAGAGCTGCACGGCGAAGCCGAGGCGGTTGGCGTCGCCGCGT 61354 |||||| | |||| | | |||||||| |||||||| | || || || |||| || Sbjct 381 CCGGGGAATCGCATGTAGTAAAGCTGCACAGCGAAGCCCAACCGATTCGCAGCGCCACGA 440 Query 61355 CGCTGGCGGATCAGCGACAGGTCGGAGTCGTTGAAGGTGTAGTAGCGGATCAGGTCATCC 61414 ||||| ||||||| ||||||||| | |||||| ||||||| |||||||| || || Sbjct 441 CGCTGACGGATCACCGACAGGTCACTTTAGTTGAACGTGTAGTGCCGGATCAGTTCGTCT 500 Query 61415 TGGCTTTCCGGCAGCGCAAGCAGGGTGTCCCGCTCCGTGGCCGAGAGGATCAAGCGACGC 61474 | | || | || || |||||| | || ||||| |||| || | ||| |||| ||| Sbjct 501 TTGGCATCTTGTAGTGCCAGCAGGCTTTCGCGCTCGGTGGTAGACACGATTGAGCGGCGC 560 Query 61475 GGCATGTGTCAGTCGTCCGTGCGGAGGTACTGGTAGAGGGTTTCCCGGCTGATGTTGAAC 61534 |||||| ||||||| ||| ||| ||||| || || | |||||| ||||||||| ||| Sbjct 561 GGCATG-GTCAGTCTTCC-TGC--AGGTATTGATACAAGGTTTCGCGGCTGATGCCGAAG 616 Query 61535 TCGCGGGCAAGCTGCGCCTTGGGCTCGCCGGCCGTCGCTCGCTGCCGCAGGGTAGCAGCC 61594 || ||||| | | ||| || | || || || | ||||| | | || Sbjct 617 TCCCGGGCCACCGACGCTTTTTGATCCCCTGCTGCGACTCGCCGTTTTAACTCGGCCATT 676 Query 61595 TGCTCATCGGACAGGGCTTTCTTGCGGCCCCGGTACGCGCCACGCTGCTTGGCCAAGGCG 61654 || || | || | ||||| || ||||||| || || ||||| ||||| | || Sbjct 677 TGTTCGCTGTTCAACGATTTCTGTCGCCCCCGGTTGGCCCCGCGCTGTTTGGCAAGCACG 736 Query 61655 ATGCCCTCACGCTGCCGCTCGCGGATCAGGGCGCGCTCGAACTCAGCGAAGGCCCCCATC 61714 || ||| | ||||| || || |||||||||||||||||| |||| ||||||||||| || Sbjct 737 ATTCCCGCGCGCTGGCGTTCTCGGATCAGGGCGCGCTCGCACTCGGCGAAGGCCCC-ATG 795 Query 61715 ACCGACAGCATCAGGTTGGCCATCGGCGAGTCCTCGCCAGTGAACACCAGGCCCTCCTTC 61774 | |||||||||||| |||||||||||||||||||| || ||||| || || || || Sbjct 796 ATCGACAGCATCAGATTGGCCATCGGCGAGTCCTCACCGCTGAACGTCAATCCTTCTTTG 855 Query 61775 AGGAACTCGATGCGCACGCCGCGCTGAGTCAGCTTCTGTACCAAGCGACGCAGGTCATCG 61834 | ||||| ||||||||||| | || |||||| || || ||||| ||||||||||| Sbjct 856 ATAAACTCCATGCGCACGCCCTGTTGCGTCAGCCCTTGAACGAAGCGGCGCAGGTCATCA 915 Query 61835 AGGTTGCGGGCCAGCCGATCCATGCTATGCACCACCACTGTATCGCC 61881 ||||||| |||| ||| |||||||| ||||| ||| | |||||||| Sbjct 916 AGGTTGCTTGCCAACCGGTCCATGCTGTGCACTACCGCGGTATCGCC 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330878285722876