Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq25 141 2e-28 >seq25 Length=1288025 Score = 141 bits (156), Expect = 2e-28 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||||||| ||||| || || ||||||||||| | | ||| | |||||| Sbjct 1060198 AGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCT 1060139 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || || ||||| | ||||||||| | | |||||||||||| | Sbjct 1060138 TCAAGTTGCTTT--CCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGT 1060081 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || |||||| |||| | | ||||||| ||| ||||| || || || | Sbjct 1060080 CTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGG 1060021 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || | ||||||||||| | |||||| Sbjct 1060020 TTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153744133655806