Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq25 96.9 2e-15 seq11 93.3 3e-14 >seq25 Length=1288025 Score = 96.9 bits (106), Expect = 2e-15 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||||||| | | || | ||| || || ||||| |||||||| || Sbjct 1056835 TTGCATTCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATA 1056776 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||| | | || | || | || |||||||| || || |||||||||||||||||||||| Sbjct 1056775 ATCAGACAAGGTA-CGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGAT 1056717 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 ||| || | || ||||| || ||||| || | || ||| | || || || | Sbjct 1056716 CTGGTGGAATGCCCTCCTTATCTTGAATCTT-GGCCTTAACATTCTCGATAGTATCAGAA 1056658 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| | || || ||||| || || | ||||| || ||||| ||||| Sbjct 1056657 GGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 1056602 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| ||| |||||| || ||||||||||| | || || | || || Sbjct 1060195 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCTTCA 1060136 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || ||||| || | ||||||||| || | ||| | |||||||| || Sbjct 1060135 AGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 1060076 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | |||||||| | | || || || | || || || || Sbjct 1060075 ATCTT-AGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTT 1060017 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | |||||||||||| || ||||| Sbjct 1060016 TCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | ||| |||| |||||| || |||||| |||||||||||||| Sbjct 1058412 CATACCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATC 1058353 Query 44167 -GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || |||||||| || ||||||||||| | |||||||||||| | Sbjct 1058352 TGACAAGGT-ACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAG 1058294 Query 44226 AAGGCACACCT 44236 || | |||| Sbjct 1058293 GTGGGATACCT 1058283 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| | | ||| |||| |||||| || ||| || |||||||||||||| Sbjct 1059592 CATACCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATC 1059533 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || ||||||||||| || || || || |||||||||||||| | Sbjct 1059532 GGACAGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGG 1059473 Query 44227 AGGCACACCT 44236 ||| | |||| Sbjct 1059472 AGGAATACCT 1059463 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | || |||| ||| || || ||||||||||||||||||||| Sbjct 1059989 CATACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATC 1059930 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | || | || |||||||| || ||||||||||| | |||||||||||| | Sbjct 1059929 TGACAATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGG 1059870 Query 44227 AGGCACACCT 44236 || | |||| Sbjct 1059869 TGGGATACCT 1059860 Score = 82.4 bits (90), Expect = 5e-11 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| |||||| || ||||||||||||||||||||||| | || | || | || || Sbjct 1058789 ACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGACAAGGTA-CGACCATCCTC 1058731 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 |||||||| ||||||||||| | ||||||||| || | || | |||| Sbjct 1058730 GAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATACCT 1058682 >seq11 Length=2187803 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || |||||||| || | || || | || || || || || || |||||| Sbjct 911323 CCTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAG 911264 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| |||||||| || | ||| | ||||||||| || || || ||| | || Sbjct 911263 ATCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTT 911204 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | || ||||| | || || ||||| ||||| |||||||| ||| Sbjct 911203 TCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACG 911144 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 911143 AAGATCTGCAT 911133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359967647031762