Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq25 178 3e-39 seq11 136 1e-26 >seq25 Length=1288025 Score = 178 bits (196), Expect = 3e-39 Identities = 160/201 (80%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | ||||||||||| ||||||||||| || || |||||| Sbjct 1059990 CAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCAGAC 1060049 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||||||| ||||| || ||||| |||||||||||||| |||||||| Sbjct 1060050 ACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAGCAG 1060109 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| || || ||||||||| | |||||| | ||||| ||| | Sbjct 1060110 CGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAACATT 1060169 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 1060170 CAGAAGGAGTCCACTCTTCAT 1060190 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||||| || ||||| || ||||| ||||| || ||| || ||| Sbjct 1057241 CAGATTTTCGTTAAAACTCTTACTGGAAAGACCATCACTCTCGAAGTTGAACCTTCTGAC 1057300 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||||||||| ||| |||||||| ||||||||||| Sbjct 1057301 ACTATCGAGAACGTTAAAGCCAAGATTCAAGACAAAGAAGG 1057341 >seq11 Length=2187803 Score = 136 bits (150), Expect = 1e-26 Identities = 148/196 (76%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || || || || || || || |||||||| ||||| || Sbjct 911130 AAAATGC---AGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAG 911186 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||||||||| || ||||| ||| || || ||||| ||||| |||||||| Sbjct 911187 CCTTCAGACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCT 911246 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| ||| | ||||| || || ||||| || ||||||||| | ||||| | || Sbjct 911247 GACCAGCAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACTCTATCTGAC 911306 Query 178095 TATAACGTCCAAAAAG 178110 || ||| | || |||| Sbjct 911307 TACAACATTCAGAAAG 911322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203651217328084