Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq7077 95.1 3e-14 seq7632 91.5 3e-13 seq7616 89.7 1e-12 seq3057 89.7 1e-12 seq1254 89.7 1e-12 >seq7077 Length=321068 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||| ||| Sbjct 234262 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCAAGC 234203 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 234202 CCCACGTTGGGC 234191 >seq7632 Length=1241346 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||||| | ||||| ||||||||||||||||||| ||||| ||||||| ||||| Sbjct 634939 TTAAAATTCAAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCG 634880 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 634879 TGGGTTCGAGCCCCACGTTGGGC 634857 >seq7616 Length=854537 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 751527 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 751586 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 751587 CCCACGTTGGGC 751598 >seq3057 Length=2306 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1027 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 968 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 967 CCCACGTTGGGC 956 >seq1254 Length=2403 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1486 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1545 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1546 CCCACGTTGGGC 1557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057713025006440