Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq7343 300 2e-76 >seq7343 Length=933009 Score = 300 bits (332), Expect = 2e-76 Identities = 600/881 (68%), Gaps = 10/881 (1%) Strand=Plus/Minus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 |||||| | | | ||||| |||| || |||||||||||||| || ||||||||| Sbjct 375285 AACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGT 375226 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGC-TGAAAATATTTTAGAGTACCCCA 16781 |||||| || ||| ||||| || |||||||| | | | || ||| | ||| | Sbjct 375225 AGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCG-A 375167 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| | | || || || ||||||||||| || |||||||| | | |||||||| Sbjct 375166 GTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCA 375107 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || ||||||| || || || || |||| || ||| || || |||||||| || | Sbjct 375106 TCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCAT 375047 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 | |||||| | | |||| ||| | ||| ||| | || |||| || | | Sbjct 375046 CTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATAGTA 374987 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 ||| || || || ||||| ||||| ||||||||| ||| ||||| || |||||||||| Sbjct 374986 AACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCA 374927 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 ||||||||| || |||||||| | ||| || |||| || || ||||| || | Sbjct 374926 GGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAA 374867 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCTTTGTTA 17140 |||| || ||||| | ||| || |||| | || || | | || | |||||| | Sbjct 374866 ATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGAGC 374807 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 || |||| || || |||| || ||||| | ||| || | ||||| || || Sbjct 374806 TGA-TCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTGCG 374748 Query 17201 TTAAATAATTTCTCTTTTTCCTGTA---GGTCGATTATATACGTATCGATGAGTAGGCTG 17257 ||||| || ||||| ||| | | ||| | || || || || || || | |||| Sbjct 374747 TTAAACAAGAAA-CTTTT--CTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTG 374691 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 |||||||| ||||| || || || |||||||| ||||| || || || |||| || || Sbjct 374690 TACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCG 374631 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 | || ||| |||||| | |||||||||| | |||||||||||||| ||||| || Sbjct 374630 GTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGAT 374571 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGC 17437 || |||||||| |||| | |||| ||||| | |||| | ||| || | Sbjct 374570 GCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTC 374511 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCC 17497 || | | | |||| |||| ||||||||||| | ||||||||| || | || Sbjct 374510 CAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCT 374451 Query 17498 TTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || ||| | | ||| || || ||||| |||||||| Sbjct 374450 TTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAA 374410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517492629207840