Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq7343 271 8e-68 >seq7343 Length=933009 Score = 271 bits (300), Expect = 8e-68 Identities = 597/889 (67%), Gaps = 8/889 (1%) Strand=Plus/Minus Query 15898 AGCAACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTC 15957 || |||||| | | | ||||| || | || |||||||| ||||| || || ||||| Sbjct 375288 AGTAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTC 375229 Query 15958 TAAAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCC 16017 | |||||| | ||||||||| || |||||||| | | | | ||| | || Sbjct 375228 TGTAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACC 375169 Query 16018 CAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATT 16077 |||||| | | | || || || ||||||||||| || || ||||| | | ||| || Sbjct 375168 GAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTT 375109 Query 16078 AATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGC 16137 || || ||||| | || || || || | | | ||| | ||||| || ||||| || Sbjct 375108 CATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGC 375049 Query 16138 TTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACAT 16197 ||| ||| || | || ||| | || || ||| | || || | || | Sbjct 375048 ATCTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATAG 374989 Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || ||| || ||||| ||||| | ||||||||||||| ||| ||||| || ||||| || Sbjct 374988 TAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGT 374929 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| || |||||||| | |||||| |||| |||||| || || || Sbjct 374928 CAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAA 374869 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATCTTTAT 16376 ||||| || || |||| ||| ||||||| | || || | | || | | || || Sbjct 374868 AAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTC-TTGG 374810 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 | ||||| || | |||| || ||||| ||| ||| | ||||| || | Sbjct 374809 AGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTG 374750 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAA---TATCGATTATATACGTATCAATCAGTAAAC 16493 | |||||||| ||||| ||||| |||| | || || || |||||||| | | Sbjct 374749 CGTTAAACAA-GAAACTTTT--CTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGC 374693 Query 16494 TGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 |||||||||| ||||| || || || |||||||| ||||| |||||||| |||| ||||| Sbjct 374692 TGTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCT 374633 Query 16554 CCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | | || ||| |||||| | ||||||||| | || || || ||||| || || ||| Sbjct 374632 CGGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAG 374573 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 ||| || ||||| |||| | ||| ||||| | |||| | ||| || ||| Sbjct 374572 ATGCTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTAT 374513 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||||| | | |||| |||| ||||||||||| | |||||||| || | | Sbjct 374512 TCCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCG 374453 Query 16734 CCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 | || || ||| ||| ||| || || ||||| ||||| || | ||| Sbjct 374452 CTTTCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGAC 374404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511362056736160