Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq4314 105 5e-18 seq5491 93.3 3e-14 seq4315 93.3 3e-14 >seq4314 Length=7604 Score = 105 bits (116), Expect = 5e-18 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 18893 TGTTATAGATACAATTA-AAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGA 18951 ||| || ||||||| | ||||||||||| | | || | |||||||| | |||||| Sbjct 2025 TGTAATCAATACAATCAGAAACAAACCCACAGATA-GAAGGATGATTATGTGCGCTTGGA 1967 Query 18952 ATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGT-CAGTTTTAC 19010 | || || || || ||||| | || || ||||| || ||| ||||||||| Sbjct 1966 ACCCGGTAGACATTCCTGAAATGGCTTTGCCCCCCTGTCATT-GTCTTGTGCAGTTTTAC 1908 Query 19011 GTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGG 19070 ||||| || || ||| | || |||||| | || || ||||| | ||||||||| || ||| Sbjct 1907 GTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAGCGGATATGGGGCTGGGG 1848 Query 19071 GTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACAT 19111 ||||| || |||||||| | || || || || || ||||| Sbjct 1847 GTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACAT 1807 >seq5491 Length=7586 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 18893 TGTTATAGATACAATTA-AAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGA 18951 ||| || ||||||| | ||||||||||| | | || | |||||||| | |||||| Sbjct 5563 TGTAATCAATACAATCAGAAACAAACCCACAGATA-GAAGGATGATTATGTGCGCTTGGA 5621 Query 18952 ATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACA-CGTTATGTCAGTTTTAC 19010 | || || | || || ||||| | | || ||||| | || || ||||||||| Sbjct 5622 ACCCGGAG-ACATTCCTGAAATGGCTTTGCGCCCCTGTCATTGCCTTGTG-CAGTTTTAC 5679 Query 19011 GTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGG 19070 ||||| || || ||| | || |||||| | || || ||||| |||||||| || ||| Sbjct 5680 GTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAACCGATATGGGGCTGGGG 5739 Query 19071 GTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACAT 19111 ||||| || |||||||| | || || || || || ||||| Sbjct 5740 GTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACAT 5780 >seq4315 Length=6298 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 18893 TGTTATAGATACAATTA-AAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGA 18951 ||| || ||||||| | ||||||||||| | | || | |||||||| | |||||| Sbjct 2195 TGTAATCAATACAATCAGAAACAAACCCACAGATA-GAAGGATGATTATGTGCGCTTGGA 2253 Query 18952 ATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACA-CGTTATGTCAGTTTTAC 19010 | || || | || || ||||| | | || ||||| | || || ||||||||| Sbjct 2254 ACCCGGAG-ACATTCCTGAAATGGCTTTGCGCCCCTGTCATTGCCTTGTG-CAGTTTTAC 2311 Query 19011 GTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGG 19070 ||||| || || ||| | || |||||| | || || ||||| |||||||| || ||| Sbjct 2312 GTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAACCGATATGGGGCTGGGG 2371 Query 19071 GTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACAT 19111 ||||| || |||||||| | || || || || || ||||| Sbjct 2372 GTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACAT 2412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399464132996460