Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq4314 165 6e-36 seq5491 147 2e-30 seq4315 147 2e-30 >seq4314 Length=7604 Score = 165 bits (182), Expect = 6e-36 Identities = 180/234 (77%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGC 101806 ||||| |||| ||| || |||||| |||| | || | ||||| ||||||||||| || Sbjct 1786 AGATTGGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGT 1845 Query 101807 ACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG 101866 || || | ||||||||| |||||||||||||||| ||| || || || | |||| | Sbjct 1846 ACCCCCAGCCCCATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCA 1905 Query 101867 ACATAAAATTGACTTAATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC 101925 || ||||| || | || || |||||| || ||||| |||||| |||||||||| Sbjct 1906 ACGTAAAACTG-CACAAGACAATGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGG 1964 Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTT-TTATAGTAT 101978 |||||||| ||||| | ||||||||||||||| |||||||||| | || |||| Sbjct 1965 GTTCCAAGCGCACATAATCATCCTTCTATCTGT-GGGTTTGTTTCTGATTGTAT 2017 >seq5491 Length=7586 Score = 147 bits (162), Expect = 2e-30 Identities = 177/234 (76%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGC 101806 ||||| |||| ||| || |||||| |||| | || | ||||| ||||||||||| || Sbjct 5801 AGATTGGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGT 5742 Query 101807 ACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG 101866 || || | ||||||||| | |||||||||||||| ||| || || || | |||| | Sbjct 5741 ACCCCCAGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCA 5682 Query 101867 ACATAAAATTGACTTAATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC 101925 || ||||| || | || | |||||| || |||| |||||| |||||||||| Sbjct 5681 ACGTAAAACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGTCT-CCGG 5624 Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTT-TTATAGTAT 101978 |||||||| ||||| | ||||||||||||||| |||||||||| | || |||| Sbjct 5623 GTTCCAAGCGCACATAATCATCCTTCTATCTGT-GGGTTTGTTTCTGATTGTAT 5571 >seq4315 Length=6298 Score = 147 bits (162), Expect = 2e-30 Identities = 177/234 (76%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGC 101806 ||||| |||| ||| || |||||| |||| | || | ||||| ||||||||||| || Sbjct 2433 AGATTGGTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGT 2374 Query 101807 ACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG 101866 || || | ||||||||| | |||||||||||||| ||| || || || | |||| | Sbjct 2373 ACCCCCAGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCA 2314 Query 101867 ACATAAAATTGACTTAATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC 101925 || ||||| || | || | |||||| || |||| |||||| |||||||||| Sbjct 2313 ACGTAAAACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGTCT-CCGG 2256 Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTT-TTATAGTAT 101978 |||||||| ||||| | ||||||||||||||| |||||||||| | || |||| Sbjct 2255 GTTCCAAGCGCACATAATCATCCTTCTATCTGT-GGGTTTGTTTCTGATTGTAT 2203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361215150291188