Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq7343 307 1e-78 seq7149 140 4e-28 >seq7343 Length=933009 Score = 307 bits (340), Expect = 1e-78 Identities = 602/886 (68%), Gaps = 3/886 (0%) Strand=Plus/Minus Query 23833 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTA 23892 |||| || | ||| |||||||| || || ||||||||||| || || || || ||| Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTG 375227 Query 23893 ATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCA 23952 ||||| | ||| |||||| | ||||| || |||||||| | ||| | | || | Sbjct 375226 TAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCGA 375167 Query 23953 ATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCA 24012 ||| | || || || || ||||| || || || ||| | | || |||| Sbjct 375166 GTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCA 375107 Query 24013 TTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGT 24072 | || ||||| |||| || || || | | ||||| || ||||| ||| || || | Sbjct 375106 TCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCAT 375047 Query 24073 CTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA 24132 || ||||| | ||| |||||| ||| | | | || || | | Sbjct 375046 CTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATAGTA 374987 Query 24133 AACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGA 24192 |||| || || || || || | || |||||||| || | ||| || ||||| || | Sbjct 374986 AACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCA 374927 Query 24193 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 24252 | |||||||| | ||| || || |||||||| || || || ||||| ||||| || | Sbjct 374926 GGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAA 374867 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-CG-CTGTCATG 24310 | |||||||| || || || || || | | ||| |||||| | || || || | Sbjct 374866 ATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGAGC 374807 Query 24311 T-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 | |||||||| | ||||| || || ||| | ||||||| || | ||| || || || | Sbjct 374806 TGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTGCGT 374747 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 |||| | | |||| | | | ||| | | || || ||||||| | || |||| Sbjct 374746 TAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTACA 374687 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 |||| || ||||| ||||| ||||| |||||||| || |||||||||||||||||||| | Sbjct 374686 TTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGGTTA 374627 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 || ||||| | |||||||| | | |||||| ||||| || || ||| |||| Sbjct 374626 CTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATGCTG 374567 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 24609 | ||||| |||| ||||| ||| || | |||| | ||| || |||||||||| Sbjct 374566 CGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCCAAT 374507 Query 24610 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 24669 || || |||| ||||| |||||||||||| |||||||| || || || || || | Sbjct 374506 GATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTTTCT 374447 Query 24670 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||| | | ||||||||| |||||||||| || || || ||||| Sbjct 374446 TGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 140 bits (154), Expect = 4e-28 Identities = 348/525 (66%), Gaps = 5/525 (1%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || |||||| || || || || || | | ||| |||||||| ||||| || Sbjct 124026 GTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCCGGTTTTCAGG 123967 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| |||||||| ||||| | || | || || | | | | || Sbjct 123966 CCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGCTTTTTCAATG 123907 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| |||| | ||| ||||| ||||| || || || | || || ||||| | | | Sbjct 123906 TGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGCCATATCGAGG 123847 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || ||||| | ||||||||| | || || || | | ||| | || || || | | Sbjct 123846 ATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTCATCAGGGATG 123787 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 | | | || || || || || || | || | ||||| ||| || | | Sbjct 123786 TCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTCATCGTGTCGTCC 123727 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | ||| ||||| || | | || |||||| |||| || |||||||| || || Sbjct 123726 CACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGATTGACCACTTGAAACTCCCCG 123667 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 |||| ||||||||||||||||| ||||| || ||||| || || || ||||||||| Sbjct 123666 GACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTCGTTATTTCCC 123607 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTAAGACC 53283 | ||||| || ||||| || || ||||| || |||| || ||| | ||||| | || Sbjct 123606 AGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCA-GAAGCAACGAGTTTCTTACGCC 123548 Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 | | | |||||| | |||| | |||||| ||| ||||| Sbjct 123547 ATGTTTGGCGATTTTCGCCTTTAACGCCGCCCAATCCCACAGATC 123503 Score = 131 bits (144), Expect = 2e-25 Identities = 212/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 54359 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 54418 ||||||||||| || || ||||| ||| | || || || ||| || | ||| | Sbjct 122239 TAGATGCCCTCAATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAGTTGAGGT 122180 Query 54419 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 54478 | || | || || || | || ||| |||||||| || | || || || | Sbjct 122179 CTGGGCGTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCTGACATG 122120 Query 54479 AGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 54538 | ||||| || ||||| ||||| || ||||| | ||| || || |||| ||| | | Sbjct 122119 AAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAGACCCTC 122060 Query 54539 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTT 54598 || ||||||||||| || |||||||| ||||| ||| || ||||| | || || | Sbjct 122059 ATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATACGACCTC 122000 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 |||| ||||| || ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct 121999 TCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATCTCGGTCGTAAATAATGCACGAG 121940 Query 54659 TTGAG 54663 ||||| Sbjct 121939 TTGAG 121935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593660832594240