Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4314 122 1e-22 seq5491 105 8e-18 seq4315 105 8e-18 >seq4314 Length=7604 Score = 122 bits (134), Expect = 1e-22 Identities = 139/184 (76%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 145756 GTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCC 145815 |||| ||||||| |||||| || ||||||| ||||||||| ||||| || || |||||| Sbjct 1792 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 1851 Query 145816 AGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAG 145875 |||||||| ||| | || | || |||| ||||| || || ||||| || ||||| Sbjct 1852 AGCCCCATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 1911 Query 145876 AACTGGCACAGGA-GGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCA 145934 |||| ||||| || || ||||| |||| ||||| | || | ||| |||||||||| Sbjct 1912 AACT-GCACAAGACAATGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGGGTTCCA 1970 Query 145935 GGCG 145938 ||| Sbjct 1971 AGCG 1974 >seq5491 Length=7586 Score = 105 bits (116), Expect = 8e-18 Identities = 136/184 (74%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 145756 GTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCC 145815 |||| ||||||| |||||| || ||||||| ||||||||| ||||| || || |||||| Sbjct 5795 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 5736 Query 145816 AGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAG 145875 |||||||| || || | || |||| ||||| || || ||||| || ||||| Sbjct 5735 AGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 5676 Query 145876 AACTGGCAC-AGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCA 145934 |||| |||| ||| || ||||| ||| ||||| | || | || | |||||||||| Sbjct 5675 AACT-GCACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCA 5618 Query 145935 GGCG 145938 ||| Sbjct 5617 AGCG 5614 >seq4315 Length=6298 Score = 105 bits (116), Expect = 8e-18 Identities = 136/184 (74%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 145756 GTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCC 145815 |||| ||||||| |||||| || ||||||| ||||||||| ||||| || || |||||| Sbjct 2427 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 2368 Query 145816 AGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAG 145875 |||||||| || || | || |||| ||||| || || ||||| || ||||| Sbjct 2367 AGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 2308 Query 145876 AACTGGCAC-AGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCA 145934 |||| |||| ||| || ||||| ||| ||||| | || | || | |||||||||| Sbjct 2307 AACT-GCACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCA 2250 Query 145935 GGCG 145938 ||| Sbjct 2249 AGCG 2246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590016405639520