Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7343 286 4e-72 seq7453 147 2e-30 seq6233 147 2e-30 seq1586 147 2e-30 seq5761 129 6e-25 seq7010 125 7e-24 seq6955 123 3e-23 >seq7343 Length=933009 Score = 286 bits (316), Expect = 4e-72 Identities = 449/631 (71%), Gaps = 14/631 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||||||||| | || |||||| | ||||| || || |||||||| ||||| || ||| Sbjct 374371 GAGCCGCTGCTTAGGGAAAACCCCAGACGGTTTGTCATCTTCCCCATTCAATATCCAGAC 374430 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| | |||||| || || || || ||||| |||||| || || |||||||| Sbjct 374431 ATCTGGGAAAAGTACAAGAAAGCGGAAGCCTCGTTTTGGACCACGGAAGAAGTGGACCTA 374490 Query 116696 TC-CAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || |||| | ||| | | ||| | ||| |||| || | || ||||| ||| Sbjct 374491 TCTCAAGACCTCGATC-ATTGGAATAAGCTGACAAACAATGAAAGGCACTTCATATCGCA 374549 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||||||||||||||||| || || ||||| || ||||| ||||| || || || || Sbjct 374550 TGTGCTGGCCTTTTTCGCAGCATCTGATGGCATTGTGAACGAAAATCTTGTGGAACGATT 374609 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | ||||| ||||| || ||||||| | || ||||| || ||||| || ||||| || Sbjct 374610 CAGCCAGGAAGTGCAAGTAACCGAGGCTAGATGTTTCTATGGGTTTCAAATAGCCATCGA 374669 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT--GCGCTCTTCGGAG 116932 || | ||||| |||||||| | || || || || ||| | ||| || | Sbjct 374670 AAATATTCACTCTGAAATGTACAGCATGCTGATTGAGACCTACATCAGCGATCCTGTTCA 374729 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGA 116991 || ||| | | ||||| ||||| || || || | || || || || ||| || || || Sbjct 374730 GAAAAGTTTC--TTGTTTAACGCAATTGAAACACTTCCCTGTGT-AAGGAGGAAAGCGGA 374786 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 |||||||| |||||| | || ||| | || | || || ||| | | || || | Sbjct 374787 CTGGGCGCTTAAGTGGATCAGCTCCA-AGACGTCCACATTTGGAGAGAGAATCGTCGCTT 374845 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 |||| || ||||| || | || || || ||||| || || | || || ||||| |||| Sbjct 374846 TCGCAGCTGTCGAAGGAATATTTTTCTCTGGCAGCTTTGCTTCGATCTTCTGGCTTAAGA 374905 Query 117111 AACGCGGCCTCATGCCCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 |||||||| | |||||||||||||| ||||| || || || |||||||| ||||| || Sbjct 374906 AACGCGGCTTGATGCCCGGCCTGACATTTTCA--AATGAACTGATCTCCAGAGACGAAGG 374963 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 ||||||| |||||||||||||| || ||| Sbjct 374964 ATTGCATTGTGACTTTGCCTGTTTACTATTC 374994 >seq7453 Length=213858 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| |||||||| | || ||||| |||| | Sbjct 107890 ATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACTCTTGAGGTCGA-GCCATC 107832 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | || | ||||| | || |||||||||||||| | ||||| Sbjct 107831 AGATACTATCGAAAATGTTAAAGCCAAAATCCAGGATAAAGAGGGCATCCCTCCCGACCA 107772 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| | |||||||| Sbjct 107771 GCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTACAA 107712 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||| ||||| | |||||| | |||||||| |||| Sbjct 107711 CATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 107662 >seq6233 Length=1575 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || |||||||| | || ||||| |||| | Sbjct 414 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGA-GCCATC 472 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | || | ||||| | ||||||||||||||||| | ||||| Sbjct 473 AGATACCATCGAAAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACCA 532 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| | ||||| || Sbjct 533 GCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATAA 592 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||| ||||| | |||||| | |||||||| |||| Sbjct 593 CATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 642 >seq1586 Length=2413 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || |||||||| | || ||||| |||| | Sbjct 1852 ATGCAGATCTTCGTGAAGACTCTGACGGGGAAGACCATCACTCTTGAGGTCGA-GCCATC 1910 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | || | ||||| | ||||||||||||||||| | ||||| Sbjct 1911 AGATACCATCGAAAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATCCCTCCCGACCA 1970 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| || | ||||| | ||||| || Sbjct 1971 GCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGACGCACTTTGTCGGACTATAA 2030 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||| ||||| | |||||| | |||||||| |||| Sbjct 2031 CATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGAGGTTGAGGGGAGGCG 2080 >seq5761 Length=8615 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| |||| | Sbjct 99 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGA-GCCATC 157 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| | || | ||||||| ||||| || ||||| || | || || Sbjct 158 AGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCA 217 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || ||| |||| || | || ||||| ||||||||| Sbjct 218 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAA 277 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || ||| | ||| | | ||||| || || Sbjct 278 CATCCAGAAGGAATCCACCCTTCATTTGGTGCTCAGATTGAGAGGAGG 325 >seq7010 Length=35453 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || || ||||||||| | || ||||| |||| | Sbjct 8906 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAGACCATCACCCTTGAGGTCGA-GCCATC 8848 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| | || | ||||||| ||||| || ||||| || | || || Sbjct 8847 AGACACCATCGAAAATGTAAAAGCGAAAATTCAGGACAAGGAAGGCATACCTCCCGATCA 8788 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || ||| |||| || | || ||||| ||||||||| Sbjct 8787 GCAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCCTATCCGACTACAA 8728 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || | ||| | | ||||| || || Sbjct 8727 CATCCAGAAGGAATCCACCCTTCACTTGGTGCTCAGATTGAGAGGAGG 8680 >seq6955 Length=469295 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || || || ||||||||||| | || || |||||| | Sbjct 95323 AATGCAAATCTTTGTTAAAACCCTGACTGGAAAAACCATCACTTTGGAAGTGGAAGCCTC 95382 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | ||||| | || | || || | ||||| || ||||||||| | |||| Sbjct 95383 AGATACCATCGAAAACG-TTAAAGCTAAGATCCAAGACAAGGAAGGCATCCCCCCAGACC 95441 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| || || || ||| |||| || | ||||| || |||||||| Sbjct 95442 AGCAGCGTCTCATCTTTGCTGGAAAGCAGTTGGAGGATGGCCGCACACTTTCCGACTACA 95501 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| ||||| |||| || || Sbjct 95502 ACATCCAAAAGGAATCCACCCTTCA 95526 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || || ||||||||||| | || || ||| | | Sbjct 94184 ATGCAGATCTTCGTGAAAACATTAACTGGAAAAACCATCACTTTGGAAGTGGAACCTTCA 94243 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | |||||||| || |||||| | |||||| Sbjct 94244 GACACAATCGAGAATGTTAAGGCTAAAATCCAGGACAAAGAAGGAATCCCCCCAGACCAG 94303 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| || || || |||| || | ||||| || |||||||||| Sbjct 94304 CAGCGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGCACTCTTTCCGACTACAAC 94363 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| | || || || | || ||||| |||| || || Sbjct 94364 ATCCAGAAAGAGTCTACTCTTCACTTGGTTTTGCGGCTGAGAGGAGG 94410 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | || |||||||| || || | || || ||| || | Sbjct 94867 AATGCAAATCTTCGTGAAAACTTTAACCGGCAAAACGATTACTTTGGAAGTGGAACCCTC 94926 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| || || | ||||| || ||||| ||| | |||| Sbjct 94927 AGACACAATTGAGAACGTT-AAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCAGACC 94985 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || || || ||| |||| || | ||||| | ||||||| Sbjct 94986 AGCAGAGATTGATCTTTGCAGGAAAGCAGTTGGAGGATGGACGCACTTTATCTGACTACA 95045 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| || |||||| |||| ||||| | |||||| | |||||||| || Sbjct 95046 ACATTCAAAAGGAGTCCACTTTGCATTTGGTGTTGAGATTGAGGGGAGG 95094 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || || || |||||||| || | || ||||| | | Sbjct 95095 AATGCAAATTTTTGTCAAAACTCTTACTGGAAAAACCATTACACTTGAAGTCGAGCCTTC 95154 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | || | || || | |||||||| || || ||| | ||||| Sbjct 95155 TGATACTATTGAAAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGACCA 95214 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| || | ||| || ||||| |||| |||| || || | || ||||| Sbjct 95215 ACAGAGACTGATTTTCGCAGGAAAACAATTGGAAGACGGCCGAACTTTGTCTGATTACAA 95274 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || | ||| | | ||||| || || Sbjct 95275 CATCCAGAAGGAATCCACTCTTCACTTGGTGCTCAGGTTGAGAGGTGG 95322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515166467314880