Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4314 174 1e-38 seq5491 156 3e-33 seq4315 156 3e-33 >seq4314 Length=7604 Score = 174 bits (192), Expect = 1e-38 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| |||||||||||| |||| | || | ||||| |||||||||||||| ||||| Sbjct 1792 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 1851 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || |||||||| |||||||||||||| || || || || || | |||| | || ||| Sbjct 1852 AGCCCCATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 1911 Query 97237 AACTGACTCAATAC-ATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||||| | ||| || ||||||||||||||| ||||||| |||| |||| ||||| Sbjct 1912 AACTG-CACAAGACAATGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGGGTTCCA 1970 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGT-ATGGTATTAATTA 97348 ||| ||||| | ||| |||||||| | ||||||||| | | || ||||| |||| Sbjct 1971 AGCGCACATAATCATCCTTCTATCTG-TGGGTTTGTTTCTGATTGTATTGATTA 2023 >seq5491 Length=7586 Score = 156 bits (172), Expect = 3e-33 Identities = 179/234 (76%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| |||||||||||| |||| | || | ||||| |||||||||||||| ||||| Sbjct 5795 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 5736 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || |||||||| | |||||||||||| || || || || || | |||| | || ||| Sbjct 5735 AGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 5676 Query 97237 AACTGACTCAATAC-ATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||||| | ||| | |||||||||| |||| ||||||| |||| ||| | ||||| Sbjct 5675 AACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGTCTCCG-GGTTCCA 5618 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGT-ATGGTATTAATTA 97348 ||| ||||| | ||| |||||||| | ||||||||| | | || ||||| |||| Sbjct 5617 AGCGCACATAATCATCCTTCTATCTG-TGGGTTTGTTTCTGATTGTATTGATTA 5565 >seq4315 Length=6298 Score = 156 bits (172), Expect = 3e-33 Identities = 179/234 (76%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| |||||||||||| |||| | || | ||||| |||||||||||||| ||||| Sbjct 2427 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 2368 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || |||||||| | |||||||||||| || || || || || | |||| | || ||| Sbjct 2367 AGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 2308 Query 97237 AACTGACTCAATAC-ATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCA 97295 ||||| | ||| | |||||||||| |||| ||||||| |||| ||| | ||||| Sbjct 2307 AACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGTCTCCG-GGTTCCA 2250 Query 97296 AGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGT-ATGGTATTAATTA 97348 ||| ||||| | ||| |||||||| | ||||||||| | | || ||||| |||| Sbjct 2249 AGCGCACATAATCATCCTTCTATCTG-TGGGTTTGTTTCTGATTGTATTGATTA 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346749393991160