Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7453 122 1e-22 seq6955 116 4e-21 seq6233 116 4e-21 seq1586 116 4e-21 seq7364 111 2e-19 seq6998 109 6e-19 seq7515 105 8e-18 seq7295 105 8e-18 seq7317 93.3 5e-14 seq7352 89.7 6e-13 seq5761 89.7 6e-13 seq7010 84.2 3e-11 >seq7453 Length=213858 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || | ||||||||||||||| ||| |||||| || || ||||| || | | Sbjct 107664 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 107723 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||| || ||||| || || ||||||||||||| || Sbjct 107724 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 107783 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| || ||| |||||| ||| | | | | || || | || || Sbjct 107784 ATGCCCTCTTTATCCTGGATTTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGACC 107843 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| |||||||| || ||||| || ||||| ||||| Sbjct 107844 TCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 107890 >seq6955 Length=469295 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || || | ||||||||||||||| ||| |||||||||||| ||||| |||| Sbjct 95095 TCCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGA 95036 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 | ||| || | || || | |||||| || || || || | || ||||||||| | || Sbjct 95035 TAAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGG 94976 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| ||| || || | || | | ||||| | |||||| Sbjct 94975 AATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCAC 94916 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || |||||||| |||| || || || |||||||||||| Sbjct 94915 TTCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCATT 94867 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | | | |||||| || | ||| |||||||| || ||||| || | Sbjct 95551 TCCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGA 95492 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || | |||||| ||||| || ||||| ||||||||||| | || Sbjct 95491 AAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 95432 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || |||||||| ||| || ||| | | | | || || | |||||| Sbjct 95431 GATGCCTTCCTTGTCTTGGATCTTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCAC 95372 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || || || ||||||||||||||| Sbjct 95371 TTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCATT 95323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||||| ||||| || | || ||| || || || ||||| || | Sbjct 94410 CCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAA 94351 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | ||||| |||||||| ||||| ||||||||||| | || Sbjct 94350 AGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGG 94291 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || |||||| |||||| || | || | | ||||| | |||||| Sbjct 94290 ATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACT 94231 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || |||| || || || ||||| ||||| Sbjct 94230 TCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCAT 94184 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| || | |||||||||||||| ||| || ||||| || || ||||| | Sbjct 94639 TCCACCTCTCAATCTCAACACCAAATGCAGAGTGGATTCTTTTTGGATGTTATAATCTGA 94580 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || | ||| || |||||||| || | ||| || ||||| | || Sbjct 94579 TAGGGTGCGGCCATCTTCCAACTGTTTGCCAGCGAAAATCAATCGTTGTTGGTCTGGGGG 94520 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||| | ||| | || | || | || || | | ||||| | ||| | Sbjct 94519 AATTCCTTCCTTGT-CTTGAATCTTGGCTTTAACGTTCTCAATAGTGTCTGATGGTTCAA 94461 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| |||||||| || | ||||| || || || ||||| Sbjct 94460 CCTCAAGTGTGATAGTTTTGCCAGTCAAAGTCTTCACGAAAATCTGCAT 94412 >seq6233 Length=1575 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || | ||||||||||||||| ||| |||||| || || || || || | | Sbjct 640 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGAC 581 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||| || ||||| || || ||||||||||||| || Sbjct 580 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 521 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| |||||| |||||| ||| | | | | || || | || || Sbjct 520 ATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACC 461 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || ||||| || ||||| || ||||| ||||| Sbjct 460 TCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 414 >seq1586 Length=2413 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || | ||||||||||||||| ||| |||||| || || || || || | | Sbjct 2078 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGAC 2019 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || || |||||||| || ||||| || || ||||||||||||| || Sbjct 2018 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 1959 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||| |||||| |||||| ||| | | | | || || | || || Sbjct 1958 ATGCCCTCTTTGTCCTGGATTTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGACC 1899 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || ||||| || ||||| || ||||| ||||| Sbjct 1898 TCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT 1852 >seq7364 Length=2510488 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1360744 AAAAATTTTCTCTCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATAC 1360803 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 1360804 TTACCACTATACTACCGAAGA 1360824 >seq6998 Length=2671234 Score = 109 bits (120), Expect = 6e-19 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 601020 ATTAAAAAGTTTCTCTCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGA 601079 Query 60114 TACTCACCACTATACTACCGAGGA-TTGAA 60142 |||| |||||||||||||||| || ||||| Sbjct 601080 TACTTACCACTATACTACCGAAGACTTGAA 601109 Score = 109 bits (120), Expect = 6e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104 |||| ||| ||||||| || ||| |||| ||||||||||||| ||||||||||||||| Sbjct 1475680 TTAAAATTTTTGAAAAAGTTGCTCTCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGAC 1475739 Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||| ||||| |||||||||||||||| || Sbjct 1475740 AGGCGGGGATACTTACCACTATACTACCGAAGA 1475772 >seq7515 Length=654141 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 565840 AAAAAGTTTCTCTCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATAC 565781 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 565780 TTACCACTATACTACCGAAGA 565760 >seq7295 Length=566087 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 213415 AAAAAGTTTCTCTCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATAC 213356 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 213355 TTACCACTATACTACCGAAGA 213335 >seq7317 Length=3493502 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/68 (91%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1310509 GGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACCGAA 1310450 Query 60136 GA-TTGAA 60142 || ||||| Sbjct 1310449 GACTTGAA 1310442 >seq7352 Length=1285855 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 878548 AAAAAGTTACTCTCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATAC 878607 Query 60117 TCACCACTATAC 60128 | |||||||||| Sbjct 878608 TTACCACTATAC 878619 >seq5761 Length=8615 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || | | ||||||||| | ||| ||||| || || ||||| || | Sbjct 325 CCTCCTCTCAATCTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAT 266 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | ||||||||||||||| || | |||||||| |||| || Sbjct 265 AGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGT 206 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| |||| | ||| | | | | ||||| | || || Sbjct 205 ATGCCTTCCTTGTCC-TGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGAC 147 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || || || || || |||||||| Sbjct 146 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 99 >seq7010 Length=35453 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| || | | |||||| || | ||| ||||| || || ||||| || | Sbjct 8680 CCTCCTCTCAATCTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAT 8739 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | ||||||||||||||| || | |||||||| |||| || Sbjct 8740 AGGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGT 8799 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || ||||||||| ||| |||| | ||| | | | | ||||| | || || Sbjct 8800 ATGCCTTCCTTGTCC-TGAATTTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGAC 8858 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || || || || || |||||||| Sbjct 8859 CTCAAGGGTGATGGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 8906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571759074468640