Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6955 122 6e-23 seq7453 118 7e-22 seq6233 114 8e-21 seq1586 114 8e-21 seq7010 107 1e-18 seq5761 102 5e-17 >seq6955 Length=469295 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||| ||||||| ||| | || ||| || || |||||||||||||| Sbjct 95551 TCCTCCTCTCAGCCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCGGA 95492 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || ||||||||||| || || || ||||| ||||||||||| ||| Sbjct 95491 AAGTGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCTGGGGG 95432 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||| || ||||| | | | || | ||| | | ||| | Sbjct 95431 GATGCCTTCCTTGTCTTGGATC-TTAGCTTTAACGTTTTCGATGGTATCTGAGGCTTCCA 95373 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||||||||| || || || ||||| |||||||| ||||| Sbjct 95372 CTTCCAAAGTGATGGTTTTTCCAGTCAGGGTTTTAACAAAGATTTGCAT 95324 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||||| || |||| ||| | |||| |||||||| |||||||||||||| Sbjct 94410 CCTCCTCTCAGCCGCAAAACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCGGAA 94351 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||| ||||| || ||||||||||| ||||||||||| ||| Sbjct 94350 AGAGTGCGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGCTGCTGGTCTGGGGGG 94291 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | || ||||| || || ||| | || | || | || | | ||| || Sbjct 94290 ATTCCTTCTTTGTCCTGGATTTTAGCCTTAACATTCTCGATTGTGTCTGAAGGTTCCACT 94231 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||||||||| || || | |||||||| |||||||||||| Sbjct 94230 TCCAAAGTGATGGTTTTTCCAGTTAATGTTTTCACGAAGATCTGCATC 94183 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || ||| ||||||| ||| | ||| ||| |||||||||||||| || || Sbjct 95779 TCCTCCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGTATGTTGTAATCCGA 95720 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | ||| |||| ||||| || |||||||||||||| | || ||||||||| || Sbjct 95719 TAAAGTGCGGCCGTCTTCCAATTGTTTGCCTGCGAAAATCAACCTCTGCTGGTCTGGAGG 95660 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || || ||||| ||| || ||||| | || | || | || | | ||| | Sbjct 95659 AATGCCTTCTTTGTCCTGGATC-TTAGCTTTAACATTCTCGATGGTGTCTGAGGGTTCCA 95601 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||| ||||| || || || |||||||| || || ||||| Sbjct 95600 CTTCCAAAGTGATAGTTTTTCCAGTCAGGGTTTTCACGAAAATTTGCAT 95552 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| |||| |||| |||||||| ||||||||| ||||||||||| || Sbjct 94867 TCCTCCTCTCAGTCTCAAAACCAAATGTAAAGTGGATTCTTTCTGGATGTTGTAGTCAGA 94808 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || ||||| ||||| || ||||| | || ||| ||||| || Sbjct 94807 CAATGTACGTCCATCTTCTAACTGTTTGCCGGCAAAAATTAACCTCTGTTGGTCTGGAGG 94748 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| ||| || ||||| | || | || | ||| | | ||||| Sbjct 94747 AATTCCTTCCTTGTCCTGAATC-TTGGCTTTAACATTTTCAATGGTATCAGATGGTTCGA 94689 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || || |||||||| || || ||||| ||||| || ||||| Sbjct 94688 CTTCAAGTGTAATTGTTTTGCCAGTAAGGGTTTTTACAAAAATTTGCAT 94640 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || ||| ||||||| ||| | ||| ||| ||||| |||||||| || || Sbjct 95323 TCCACCTCTCAACCTGAGCACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGA 95264 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| ||||| || || ||||||||||| || | ||| ||||| ||| Sbjct 95263 CAAAGTTCGGCCGTCTTCCAATTGTTTTCCTGCGAAAATCAGTCTCTGTTGGTCTGGGGG 95204 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||| ||| || ||||| | || | || | ||| | | |||| Sbjct 95203 AATTCCTTCTTTGTCCTGGATC-TTGGCTTTAACATTTTCAATAGTATCAGAAGGCTCGA 95145 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | || |||||||| || || |||||||| ||||| || ||||| Sbjct 95144 CTTCAAGTGTAATGGTTTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 95096 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || ||||| || || || || ||| | || ||||| || ||||||||||| Sbjct 95971 TTCTTTTTGGATGTTATAATCTGATAGGGTGCGGCCATCTTCCAATTGTTTGCCTGCGAA 95912 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| || | ||| ||||| || | | |||||||| |||||| ||| | || Sbjct 95911 AATCAGTCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTAACATT 95852 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | |||||| || | || || |||||||| || |||||||| || Sbjct 95851 TTCGATGGTATCAGATGGTTCGACTTCAAGTGTAATAGTTTTGCCAGTCAGAGTTTTAAC 95792 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 95791 AAAAATCTGCAT 95780 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || |||| ||||| || ||||| || || || ||||||||||| || Sbjct 95095 TCCTCCCCTCAATCTCAACACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGA 95036 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | || | || ||||||||||| ||||| || || | | ||||||||| ||| Sbjct 95035 TAAAGTGCGTCCATCCTCCAACTGCTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGGGG 94976 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | | | || | || | | ||| || Sbjct 94975 AATGCCTTCCTTGTCTTGGATCTTCGCCTTAACGTTCTCAATTGTGTCTGAGGGTTCCAC 94916 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || ||||||||||| | ||||||||| ||||| ||||| Sbjct 94915 TTCCAAAGTAATCGTTTTGCCGGTTAAAGTTTTCACGAAGATTTGCAT 94868 >seq7453 Length=213858 Score = 118 bits (130), Expect = 7e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||||| ||||| || ||||| || ||||| ||||||||||| ||| Sbjct 107664 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 107723 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||| ||||||||| ||||| || ||||||||||||||| || Sbjct 107724 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 107783 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| || || || ||| ||||| | || | || | ||| | | ||||| Sbjct 107784 ATGCCCTCTTTATCCTGGAT-TTTGGCTTTAACATTTTCGATAGTATCTGATGGCTCGAC 107842 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| || ||||| ||||| |||||||||||| || Sbjct 107843 CTCAAGAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTCT 107894 >seq6233 Length=1575 Score = 114 bits (126), Expect = 8e-21 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||||| ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 640 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGAC 581 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||| ||||||||| ||||| || ||||||||||||||| || Sbjct 580 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 521 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| ||||| | || | || | ||| | | ||||| Sbjct 520 ATGCCCTCTTTGTCCTGGAT-TTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGAC 462 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAATGGT 34401 || | |||||||| || || || ||||| ||||| ||||||||||| ||||| ||| Sbjct 461 CTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT--CTCGAGCGGT 404 Query 34402 G 34402 | Sbjct 403 G 403 >seq1586 Length=2413 Score = 114 bits (126), Expect = 8e-21 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || ||||| ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 2078 CCTCCCCTCAACCTCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAGTCCGAC 2019 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||| ||||||||| ||||| || ||||||||||||||| || Sbjct 2018 AAAGTGCGTCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCGGGAGGG 1959 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| ||||| | || | || | ||| | | ||||| Sbjct 1958 ATGCCCTCTTTGTCCTGGAT-TTTGGCTTTAACATTTTCGATGGTATCTGATGGCTCGAC 1900 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAATGGT 34401 || | |||||||| || || || ||||| ||||| ||||||||||| ||||| ||| Sbjct 1899 CTCAAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACGAAGATCTGCAT--CTCGAGCGGT 1842 Query 34402 G 34402 | Sbjct 1841 G 1841 >seq7010 Length=35453 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 || ||||||| ||| | || ||| ||||| |||||||||||||| || ||| | Sbjct 8692 CTGAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCA 8751 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || ||||||||||| || ||||| || | |||||||| ||| || | || |||||| Sbjct 8752 TCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTG 8811 Query 34295 TCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || || ||| || |||| || | || | || | | ||||| || | ||||| Sbjct 8812 TCCTGAAT-TTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGAT 8870 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 ||| || || |||||||||||||| || || ||||||| Sbjct 8871 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCATCG 8908 >seq5761 Length=8615 Score = 102 bits (112), Expect = 5e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 34175 CTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCG 34234 || ||||||| || | || ||| ||||| |||||||||||||| || ||| | Sbjct 313 CTGAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGTCCA 254 Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || ||||||||||| || ||||| || | |||||||| ||| || | || |||||| Sbjct 253 TCTTCCAACTGCTTACCAGCGAAGATCAAACGCTGCTGATCGGGAGGTATGCCTTCCTTG 194 Query 34295 TCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 || || ||| || |||| || | || | || | | ||||| || | ||||| Sbjct 193 TCCTGAAT-TTTCGCTTTTACATTTTCGATGGTGTCTGATGGCTCGACCTCAAGGGTGAT 135 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 ||| || || |||||||||||||| || || ||||||| Sbjct 134 GGTCTTACCAGTGAGAGTTTTCACGAAAATTTGCATCG 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323039760241280