Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq7343 174 1e-38 >seq7343 Length=933009 Score = 174 bits (192), Expect = 1e-38 Identities = 557/857 (65%), Gaps = 14/857 (2%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| || ||||| | || ||||||| || || || || || || ||| || |||| Sbjct 375276 TTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTGTAGA--TATT 375219 Query 16003 TTC--CATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAAC 16060 || ||||||||| || ||||| | | ||| || || || || | ||||| Sbjct 375218 ATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCGAGTTCCATT 375159 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 | | || || |||||||||||||| ||||| ||| | | |||||||| || || Sbjct 375158 AGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCATCCCGATA 375099 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 | ||||||| | ||| || | | ||| | | ||| ||| ||| || || || Sbjct 375098 AGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCATCTCGAATA 375039 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTA----AACATTATACA 16236 || | | ||| | | ||| ||||||||| || || || | || ||| Sbjct 375038 ATGCCCGTCACT-CTTTCTTT---GGAGGGTTTTTGAACGAGATAGGAGAATAGTAAACA 374983 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||| |||||||||||||||||||| || || | || ||||||||||| || || Sbjct 374982 GGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCAGGCC 374923 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATAT 16356 ||||| | || ||||| |||| ||| || || | ||||| ||||| || ||||| Sbjct 374922 GGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAAATAT 374863 Query 16357 ACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctat 16416 ||||| || || || || || || | || ||| || | || | || || Sbjct 374862 TCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGGAGCTGAT 374803 Query 16417 ccattttttagcccaatttgctttttgtttAACACAGTTCA-TGTTCTCTATTGCATTAA 16475 ||| || ||||| | ||||| | |||||| | |||| || ||||| |||| Sbjct 374802 CCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTT-TCAATTGCGTTAA 374744 Query 16476 ATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTT 16535 | || || |||| | ||| || || || || || || | || ||||||| Sbjct 374743 ACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTACATTT 374684 Query 16536 CTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTT 16595 | || |||||||| || || ||||| ||||| ||||| || |||||||| |||| || || Sbjct 374683 CAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGGTTACTT 374624 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 | ||||| | || | ||| | | |||||||| || || ||||| ||||| | Sbjct 374623 GCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATGCTGCGA 374564 Query 16656 AAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAG 16715 |||| || || | || || || | |||| || | || || || ||| | | Sbjct 374563 AAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCCAATGAT 374504 Query 16716 AAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTAT 16775 | |||| |||| || || ||||| |||||||| || || | || || || | Sbjct 374503 CGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTTTCTTGT 374444 Query 16776 ACATTTTCCATATGTCT 16792 || ||| ||| |||||| Sbjct 374443 ACTTTTCCCAGATGTCT 374427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462464661896800