Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4314 152 4e-32 seq5491 143 2e-29 seq4315 143 2e-29 >seq4314 Length=7604 Score = 152 bits (168), Expect = 4e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 20321 ATGTTATTAATTTAATTA-AAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGG 20379 |||| || ||| ||| | |||| |||||| | || ||||| || ||| | ||||| ||| Sbjct 2026 ATGTAATCAATACAATCAGAAACAAACCCACA-GATAGAAGGATGATTATGTGCGCTTGG 1968 Query 20380 AACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTAC 20439 ||| | ||| | ||| |||||||||||| || |||||| || || |||||| Sbjct 1967 AACCCGGTAGACATTCCTGAAATGGCTTTGCCCCCCTGTCATTGTCTTGTGCAGTTTTAC 1908 Query 20440 GTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGT 20499 ||||||||| ||| ||||||| ||| |||||||| |||| || |||||||| ||||| Sbjct 1907 GTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAGCGGATATGGGGCTGGGG 1848 Query 20500 GTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || ||||| || || || ||||| || || ||||| || ||| Sbjct 1847 GTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACATGATCGCCCAT 1797 >seq5491 Length=7586 Score = 143 bits (158), Expect = 2e-29 Identities = 175/232 (75%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 20321 ATGTTATTAATTTAATTA-AAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGG 20379 |||| || ||| ||| | |||| |||||| | || ||||| || ||| | ||||| ||| Sbjct 5562 ATGTAATCAATACAATCAGAAACAAACCCACA-GATAGAAGGATGATTATGTGCGCTTGG 5620 Query 20380 AACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATG-CCAATTTTA 20438 ||| | | || | ||| ||||||||||| || |||||| ||| || || ||||| Sbjct 5621 AACCCGGA-GACATTCCTGAAATGGCTTTGCGCCCCTGTCAT-TGCCTTGTGCAGTTTTA 5678 Query 20439 CGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGG 20498 |||||||||| ||| ||||||| ||| |||||||| |||| | |||||||| ||||| Sbjct 5679 CGTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAACCGATATGGGGCTGGG 5738 Query 20499 TGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || ||||| || || || ||||| || || ||||| || ||| Sbjct 5739 GGTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACATGATCGCCCAT 5790 >seq4315 Length=6298 Score = 143 bits (158), Expect = 2e-29 Identities = 175/232 (75%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 20321 ATGTTATTAATTTAATTA-AAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGG 20379 |||| || ||| ||| | |||| |||||| | || ||||| || ||| | ||||| ||| Sbjct 2194 ATGTAATCAATACAATCAGAAACAAACCCACA-GATAGAAGGATGATTATGTGCGCTTGG 2252 Query 20380 AACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATG-CCAATTTTA 20438 ||| | | || | ||| ||||||||||| || |||||| ||| || || ||||| Sbjct 2253 AACCCGGA-GACATTCCTGAAATGGCTTTGCGCCCCTGTCAT-TGCCTTGTGCAGTTTTA 2310 Query 20439 CGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGG 20498 |||||||||| ||| ||||||| ||| |||||||| |||| | |||||||| ||||| Sbjct 2311 CGTTGCTAATGGGGAACTGTCGTGCCAATTGTATCAAAGATCAACCGATATGGGGCTGGG 2370 Query 20499 TGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || ||||| || || || ||||| || || ||||| || ||| Sbjct 2371 GGTACCTTTTAACATTGCCAGCTACGCCCTGCTCACTTACATGATCGCCCAT 2422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399144164929660