Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq7343 205 9e-48 >seq7343 Length=933009 Score = 205 bits (226), Expect = 9e-48 Identities = 624/951 (66%), Gaps = 40/951 (4%) Strand=Plus/Minus Query 13837 TATAATATTCAATAAAAACTAAAAATCAACATCTAACGAAAAAACATTATC---GTCTTT 13893 ||||| | || ||| | ||| |||||| |||| | |||||||||||| | | | Sbjct 375351 TATAAAGTACATTAATATCTAGAAATCAGCATCAGTGGTAAAAACATTATCTCCGGCCTC 375292 Query 13894 GTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTT 13953 | || |||| || | ||| || ||||| | || | ||||| || ||||| || || Sbjct 375291 GCCAG---TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTT 375235 Query 13954 ACCTTCCAGTGATATATTTTC--CATAAAATCAAATGGATTTGTTGACATAA-ACACTTT 14010 || || || | ||||| || ||||||||| || ||||| || ||||| | | || || Sbjct 375234 GCCCTCT-GT-AGATATTATCGACATAAAATCGAACGGATTAGT-GACATTATAAACCTT 375178 Query 14011 ATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAA 14070 |||||||| ||||| | ||| | || || || | || || || || || |||| | Sbjct 375177 TTCACAACCGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAG 375118 Query 14071 ATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTAT 14130 | || ||||| || || || | ||||| | | || | | ||| || | ||| || Sbjct 375117 CTTGCAGTTCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGAT 375058 Query 14131 AGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTA---- 14186 | || || || ||||| ||| | |||| || ||||| | ||| | Sbjct 375057 AACAACTGCATCTCGAATAATGCCCGTCACTCTTTCTTT----GGAGGGTTTTTGAACGA 375002 Query 14187 GATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTT 14246 ||| || | |||||| ||||| |||||||| | || || ||||| || |||| Sbjct 375001 GATAGGAGAATAGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTT 374942 Query 14247 CGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGA 14306 | ||||||||||| | || |||||||| || ||||| || | ||| || || | ||| | Sbjct 374941 CATTTGAAAATGTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAA 374882 Query 14307 ATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14366 | || || || |||||||| || || || || || || | | || |||||||| | Sbjct 374881 AGCTGCCAGAGAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATG 374822 Query 14367 ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCA 14426 | | ||| ||||| || ||||| || | ||| | | | | | | Sbjct 374821 TGGACGTCTTGGAGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAA 374762 Query 14427 TTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAA-----ATGTATGT 14481 ||||||||| || ||||| || | ||| ||| | || || ||||| || Sbjct 374761 GTGTTTCAATTGCGTTAAACAA--GAAACTTTTCT---GAACAGGATCGCTGATGTAGGT 374707 Query 14482 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA 14541 ||||| || | ||| |||||||||||||| || ||||| || ||||| ||||| ||||| Sbjct 374706 CTCAATCAGCATGCTGTACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATA 374647 Query 14542 AAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATT 14601 ||||||||||| || | ||| || || | |||| ||| | | |||||| || Sbjct 374646 GAAACATCTAGCCTCGGTTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTT 374587 Query 14602 AACTATACCATCACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCT 14659 || || |||||| ||||| ||||| |||| | ||| | || ||| ||| | Sbjct 374586 CACAATGCCATCAGATGCTGCGAAAAAGGCCAGCACATGCGAT--ATGAAG---TGCCTT 374532 Query 14660 TCATTG---CTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14716 |||||| | || || ||||||| | | || | ||| || || ||||| || Sbjct 374531 TCATTGTTTGTCAGCTTATTCCAATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTG 374472 Query 14717 GTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14767 |||||||| || | ||||| || ||| || |||| || ||| |||| Sbjct 374471 GTCCAAAACGAGGCTTCCGCTTTCTTGTACTTTTCCCAGATGTCTGGATAT 374421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482296231927840