Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7343 120 6e-22 seq4314 89.7 1e-12 >seq7343 Length=933009 Score = 120 bits (132), Expect = 6e-22 Identities = 576/903 (64%), Gaps = 26/903 (3%) Strand=Plus/Plus Query 101465 AGAGAAAACCCCAACCGTTTTGTATCCCGCCCCATTGTCCATGAAGATCTCTGGGAAATG 101524 || |||||||||| || ||||| | ||||||| || ||| ||||||||| | Sbjct 374383 AGGGAAAACCCCAGACGGTTTGTCATCTTCCCCATTCAATATCCAGACATCTGGGAAAAG 374442 Query 101525 TACAAAAAAGAGGTTGCCTGTTTTTGGACATTGGAAGAGATTGA--TTTCGAAAGGGATC 101582 ||||| |||| || |||| |||||||| |||||| | || | || ||| || Sbjct 374443 TACAAGAAAGCGGAAGCCTCGTTTTGGACCACGGAAGAAGTGGACCTATCTCAAGACCTC 374502 Query 101583 CTAAAGATTGGGAGAAACTCACTCAAGATGAGAAGGATTTCATTCTCCAGATTCTGGCGT 101642 | ||||| | || || || | |||| | | | ||||| || | ||||| | Sbjct 374503 G--ATCATTGGAATAAGCTGACAAACAATGAAAGGCACTTCATATCGCATGTGCTGGCCT 374560 Query 101643 TCTTTGCATCCTCTGACGGAATTGTAATTGAAAATCTTACAACACGTCTTCGTCAAGTGG 101702 | || ||| | ||||| || ||||| | ||||||||| ||| | | || | | Sbjct 374561 TTTTCGCAGCATCTGATGGCATTGTGAACGAAAATCTTGTGGAACGATTCAGCCAGGAAG 374620 Query 101703 CGCAGATTCCAGAAGCGAGGAGTTTCTTTGACTTCCAAGTTGGAATGGAGAGTATTCATG 101762 ||| | | || || || |||||| || || ||| | | || || | |||||| Sbjct 374621 TGCAAGTAACCGAGGCTAGATGTTTCTATGGGTTTCAAATAGCCATCGAAAATATTCACT 374680 Query 101763 GCAACGTCTACGGAGAACTGATTGATAGACTGGTGCCCGA--CGAAAAAGACAAGGCTAT 101820 | | ||| | |||||||| | | ||| | ||| ||| | | Sbjct 374681 CTGAAATGTACAGCATGCTGATTGAGACCTACATCAGCGATCCTGTTCAGAAAAG--TTT 374738 Query 101821 CTTGTTTAACGC--TGCACAACACTTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATT 101878 |||||||||||| | | |||||||||| | | | || ||| | | | ||||| || Sbjct 374739 CTTGTTTAACGCAATTGA-AACACTTCCCTGTG-TAAGGAGGAAAGCGGACTGGGCGCTT 374796 Query 101879 AATTGGATGCAAAGCAATAACG-----ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAG 101933 || ||||| || | | ||| |||||| | | ||| || || || || || | Sbjct 374797 AAGTGGAT-CAGCTCCAAGACGTCCACATTTGGAGAGAG-AATCGTCGCTTTCGCAGCTG 374854 Query 101934 TTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGGTA 101993 | |||||||| || || ||| || || || || |||||| | ||||| | || Sbjct 374855 TCGAAGGAATATTTTTCTCTGGCAGCTTTGCTTCGATCTTCTGGCTTAAGAAACGCGGCT 374914 Query 101994 TTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCGCG 102053 | |||| || || || | || ||||| | || || || |||||||| | ||| | | Sbjct 374915 TGATGCCCGGCCTGACATTTTCAAATGAACTGATCTCCAGAGACGAAGGATTGCATTGTG 374974 Query 102054 ACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCAAGAGAAAGGATTC 102113 ||||||| || | || || | | | ||| | | || || | |||||| | Sbjct 374975 ACTTTGCCTGTTTACTATTCTCCTA---TCTCGTTCAAAAACCCTCCAAAGAAAGAGTGA 375031 Query 102114 TTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTG 102173 | ||| | || || || || ||||| || ||||| | | | | ||||||| Sbjct 375032 CGGGCATTATTCGAGATGCAGTTGTTATCGAACAGGAGTTTCTGTCGGATGCACTGCCTG 375091 Query 102174 TTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATA 102233 ||| | | || |||||||||||| | ||| |||||||||| ||||||||||| || Sbjct 375092 TTAGTCTTATCGGGATGAACTGCAAGCTCATGTGCCAGTACATAGAATTTGTGGCTGACC 375151 Query 102234 AACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAACCCCTTCCCATTCA 102293 ||| | | ||| | || |||||| |||||||| || || || ||| || | Sbjct 375152 GACTGCTAATGGAACTCGGTTGTGAAAAGGTTTATAATGTCACTAATCCGTTCGATTTTA 375211 Query 102294 TG--GACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGAGTA 102351 || || ||||| | | ||| |||||||||||||| ||||||| |||| ||| || Sbjct 375212 TGTCGATAATATCTAC--AGAGGGCAAGACCAACTTTTTCGAAAAGAAGGTCGGCGAATA 375269 Query 102352 TCA 102354 || Sbjct 375270 CCA 375272 >seq4314 Length=7604 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/208 (71%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 35521 AAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTAT 35580 ||| ||| | |||||||||||||||||| || ||||| || | || ||| || Sbjct 2003 AAACCCACA-GATAGAAGGATGATTATGTGCGCTTGGAACCCGGTAGACATTCCTGAAAT 1945 Query 35581 GGCTCTTCCTCCATGCCACATGAC-TGCTCAATTTTATGTGGCTAATGGAGAATTGTCGT 35639 |||| | || || || || || | || || ||||| || |||||||| ||| |||||| Sbjct 1944 GGCTTTGCCCCCCTGTCA-TTGTCTTGTGCAGTTTTACGTTGCTAATGGGGAACTGTCGT 1886 Query 35640 GCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATC 35697 |||| |||||||| || |||||| ||| ||| |||| || || || || ||||| Sbjct 1885 GCCAATTGTATCAAAGATCAGCGGATATG--GGGCTGGGGGTACCTTTTAACATTGCCAG 1828 Query 35698 ATACTCTCTTCTGACTCATCTGATGGCC 35725 ||| | || || ||| | |||| ||| Sbjct 1827 CTACGCCCTGCTCACTTACATGATCGCC 1800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989480183979540