Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq7343 313 3e-80 seq7149 131 2e-25 >seq7343 Length=933009 Score = 313 bits (346), Expect = 3e-80 Identities = 607/889 (68%), Gaps = 9/889 (1%) Strand=Plus/Minus Query 33280 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCA 33339 |||| || | ||| |||||||| || || ||||||||||| || || || || || Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTC-- 375229 Query 33340 ATG-ATATATTTTC--CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATC 33396 || | ||||| || ||| ||||| |||||||| || ||||| |||| |||| | | | Sbjct 375228 -TGTAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAAC 375170 Query 33397 CCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 | | ||| | || || || || || |||||||| || ||| | | || | Sbjct 375169 CGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGT 375110 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| || || || |||| || || || | | ||||| || ||||| || || | Sbjct 375109 TCATCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTG 375050 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACA 33576 ||| | ||||| | || |||||| ||| || | | || || | Sbjct 375049 CATCTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATA 374990 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 ||||| || || || || |||| || |||||||| || | ||| || ||||| | Sbjct 374989 GTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATG 374930 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 | || |||||||| | ||| || || |||||||| || || ||||| || || || | Sbjct 374929 TCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGA 374870 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CG-CTGTC 33754 | || |||||||| || || || || || | | |||||||||| | || || || Sbjct 374869 AAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGGACGTCTTGG 374810 Query 33755 ATGT-ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | | |||||||| | ||||| || || ||| | ||||||| || | ||||| || | Sbjct 374809 AGCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTG 374750 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | ||||| | | |||| | | | ||| | | || || || |||| | || | Sbjct 374749 CGTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGT 374690 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 ||||||| || ||||| ||||| ||||| || ||||| || ||||||||||||||||||| Sbjct 374689 ACATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGG 374630 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | | |||||||| | |||||||| | | |||||| ||||| || |||||| | Sbjct 374629 TTACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATG 374570 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 34053 |||| ||||| |||| ||||| ||| || | |||| | ||| || ||||||| Sbjct 374569 CTGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCC 374510 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 ||| || || |||| ||||| |||||||||||| |||||||| || || || || | Sbjct 374509 AATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTT 374450 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | || ||| | | ||||||||| ||||||| || ||||| || ||||| Sbjct 374449 TCTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 131 bits (144), Expect = 2e-25 Identities = 212/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 63597 TAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63656 |||||||| || ||||| |||||| ||| | || || || ||| || | ||| | Sbjct 122239 TAGATGCCCTCAATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAGTTGAGGT 122180 Query 63657 CGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 63716 | | || | || || || | || ||| |||||||| || | || || || | Sbjct 122179 CTGGGCGTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCTGACATG 122120 Query 63717 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 63776 | ||||| || || || ||||| || ||||| | ||| || || |||| ||| | | Sbjct 122119 AAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAGACCCTC 122060 Query 63777 ATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTT 63836 || ||||||||||| || ||||||||||| || ||| || |||| | || || | Sbjct 122059 ATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATACGACCTC 122000 Query 63837 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 63896 |||| ||||| || ||||| |||||||| || || ||||| ||||||||||| ||| Sbjct 121999 TCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATCTCGGTCGTAAATAATGCACGAG 121940 Query 63897 TTGAG 63901 ||||| Sbjct 121939 TTGAG 121935 Score = 129 bits (142), Expect = 7e-25 Identities = 303/457 (66%), Gaps = 3/457 (1%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || |||||| || || || || || | | ||| |||||||| ||||| || Sbjct 124026 GTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCCGGTTTTCAGG 123967 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || |||| |||||||| ||||| | || | || || | | | | || Sbjct 123966 CCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGCTTTTTCAATG 123907 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 ||||| |||| | ||| ||||| ||||| || || || | || || ||||| | | | Sbjct 123906 TGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGCCATATCGAGG 123847 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || ||||| | ||||||||| | || || || | | ||| | || || || | | Sbjct 123846 ATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTCATCAGGGATG 123787 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 | | | || || || || || || | || | ||||| ||| || | | Sbjct 123786 TCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTCATCGTGTCGTCC 123727 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || | | ||| ||||| || | | || |||||| | || || ||||| || || || Sbjct 123726 CACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGATTGACCACTTGAAACTCCCCG 123667 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 |||| ||||||||||||||||| ||||| || ||||| || || || ||||||||| Sbjct 123666 GACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTCGTTATTTCCC 123607 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 | ||||| || ||||| || || ||||| || |||| Sbjct 123606 AGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCA 123570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629753138168640