Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq7343 307 1e-78 seq7149 86.0 6e-12 >seq7343 Length=933009 Score = 307 bits (340), Expect = 1e-78 Identities = 586/859 (68%), Gaps = 13/859 (2%) Strand=Plus/Minus Query 11362 TTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATA 11421 ||||||||| || ||||| || ||| ||||| | |||||| || |||||| Sbjct 375252 TTCGAAAAAGTTGGTCTTGCCCTCTGTAGATATTATCGACATAAAATCGAACGGATTAGT 375193 Query 11422 TACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTAT 11481 ||||| | || ||||||||||| | || ||| | || || || || |||||||| Sbjct 375192 GACATTATAAACCTTTTCACAACCGAGTTCCATTAGCAGTCGGTCAGCCACAAATTCTAT 375133 Query 11482 ATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAA 11541 ||||| |||| | || ||||| || |||||| || || | ||| | | || Sbjct 375132 GTACTGGCACATGAGCTTGCAGTTCATCCCGATAAGACTAACAGGCAGTGCATCCGACAG 375073 Query 11542 AAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGG 11601 |||||||| ||| ||| ||| ||||| || || ||| | ||| || || || Sbjct 375072 AAACTCCTGTTCGATAACAACTGCATCTCGAATAATGCCCGTCACTCTTTCTTTGGAGGG 375013 Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661 | || | | || || | |||||| ||||| |||||||| || ||||||||||| Sbjct 375012 TTTTTGAACGAGATAGGAGAATAGTAAACAGGCAAAGTCACAATGCAATCCTTCGTCTCT 374953 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721 || |||||||| |||||||| | ||||||||||| || ||||| || | ||| || Sbjct 374952 GGAGATCAGTTCATTTGAAAATGTCAGGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAA 374893 Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781 || | |||||| ||||| || |||||||| || |||||||| || || || | ||| Sbjct 374892 GATCGAAGCAAAGCTGCCAGAGAAAAATATTCCTTCGACAGCTGCGAAAGCGACGATTCT 374833 Query 11782 TTCTCCATAT----AC--CTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTT 11835 |||||| || || |||| ||| ||||| || ||||| || |||||| | Sbjct 374832 CTCTCCAAATGTGGACGTCTTGGAGCT---GATCCACTTAAGCGCCCAGTCCGCTTTCCT 374776 Query 11836 TTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCT--ATATTATCT 11893 |||| || | |||||| || |||||||| || | | |||||| | | ||| Sbjct 374775 CCTTACACAGGGAAGTGTTTCAATTGCGTTAAACAA--GAAACTTTTCTGAACAGGATCG 374718 Query 11894 CTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATT 11953 || | || || || || | | || |||||||| || ||||||||||| || |||||| Sbjct 374717 CTGATGTAGGTCTCAATCAGCATGCTGTACATTTCAGAGTGAATATTTTCGATGGCTATT 374658 Query 11954 TGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCT 12013 ||||| ||||||||||||| ||||| | || || ||| |||| |||| | Sbjct 374657 TGAAACCCATAGAAACATCTAGCCTCGGTTACTTGCACTTCCTGGCTGAATCGTTCCACA 374598 Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 | ||| || || ||||| |||||| | ||| ||||| || || | ||| ||| ||| Sbjct 374597 AGATTTTCGTTCACAATGCCATCAGATGCTGCGAAAAAGGCCAGCACATGCGATATGAAG 374538 Query 12074 TATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCT 12133 | |||| | || || | |||| ||||| ||| | |||| |||| || |||||| Sbjct 374537 TGCCTTTCATTGTTTGTCAGCTTATTCCAATGATCGAGGTCTTGAGATAGGTCCACTTCT 374478 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 || ||||||||| || | | || || ||| ||| |||||| || |||| | | Sbjct 374477 TCCGTGGTCCAAAACGAGGCTTCCGCTTTCTTGTACTTTTCCCAGATGTCTGGATATTGA 374418 Query 12194 ATAGGGAAAATAACGAACC 12212 || ||||| || || |||| Sbjct 374417 ATGGGGAAGATGACAAACC 374399 >seq7149 Length=218332 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||| | || ||||| | |||| || ||||||| |||||||||||| ||| Sbjct 124032 TCGACGGTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCCGGTT 123973 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || ||| |||| |||||||| ||||| || ||| |||| | | || Sbjct 123972 TTCAGGCCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGCTTTT 123913 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || || | || ||| ||| ||||| || ||||| || || | || || ||||| Sbjct 123912 TCAATGTGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGCCATA 123853 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATT 37014 || | || |||||| || || ||||| ||||| || || ||| Sbjct 123852 TCGAGGATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATT 123808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468476846486720