Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq7343 336 3e-87 seq7149 145 1e-29 >seq7343 Length=933009 Score = 336 bits (372), Expect = 3e-87 Identities = 609/888 (69%), Gaps = 7/888 (1%) Strand=Plus/Minus Query 35856 TAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTA 35915 |||| || | ||| |||||||| || || ||||||||||| || || || || ||| Sbjct 375286 TAACACCTACTTTCTGGTATTCGCCGACCTTCTTTTCGAAAAAGTTGGTCTTGCCCTCTG 375227 Query 35916 ATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCA 35975 ||||| | ||| |||||||| ||||| | |||||||||| |||| | | || | Sbjct 375226 TAGATATTATCGACATAAAATCGAACGGATTAGTGACATTATAAACCTTTTCACAACCGA 375167 Query 35976 ATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 36035 ||| | || || || || ||||||||||| || ||| | | || |||| Sbjct 375166 GTTCCATTAGCAGTCGGTCAGCCACAAATTCTATGTACTGGCACATGAGCTTGCAGTTCA 375107 Query 36036 TTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGT 36095 | || ||||| |||| || || || | | ||||| || ||||| ||| || || | Sbjct 375106 TCCCGATAAGACTAACAGGCAGTGCATCCGACAGAAACTCCTGTTCGATAACAACTGCAT 375047 Query 36096 CTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA 36155 || ||||| | ||| |||||| ||| | | | || || | | Sbjct 375046 CTCGAATAATGCCCGTCACTCTTTCTTTGGAGGGTTTTTGAACGAGATAGGAGAATAGTA 374987 Query 36156 AACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGA 36215 |||| || || || || || | || |||||||| || | ||| || ||||| || | Sbjct 374986 AACAGGCAAAGTCACAATGCAATCCTTCGTCTCTGGAGATCAGTTCATTTGAAAATGTCA 374927 Query 36216 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 36275 | |||||||| | ||| || || |||||||| || || || ||||| ||||| || | Sbjct 374926 GGCCGGGCATCAAGCCGCGTTTCTTAAGCCAGAAGATCGAAGCAAAGCTGCCAGAGAAAA 374867 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335 | |||||||| || || || || || | | |||||||||| | || || ||| || | Sbjct 374866 ATATTCCTTCGACAGCTGCGAAAGCGACGATTCTCTCTCCAAATGTGG-AC-GTCTTGGA 374809 Query 36336 -----TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 ||||||| | ||||| || || ||| | ||||||| || | ||| || || || Sbjct 374808 GCTGATCCACTTAAGCGCCCAGTCCGCTTTCCTCCTTACACAGGGAAGTGTTTCAATTGC 374749 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 ||||| | | |||| | | | ||| | | || || ||||||| | || || Sbjct 374748 GTTAAACAAGAAACTTTTCTGAACAGGATCGCTGATGTAGGTCTCAATCAGCATGCTGTA 374689 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 |||||| || ||||| ||||| ||||| |||||||| || |||||||||||||||||||| Sbjct 374688 CATTTCAGAGTGAATATTTTCGATGGCTATTTGAAACCCATAGAAACATCTAGCCTCGGT 374629 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 | || ||||| | |||||||| | | |||||| ||||| || || ||| || Sbjct 374628 TACTTGCACTTCCTGGCTGAATCGTTCCACAAGATTTTCGTTCACAATGCCATCAGATGC 374569 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 ||| ||||| |||| ||||| ||| || | |||| || ||| || |||||||| Sbjct 374568 TGCGAAAAAGGCCAGCACATGCGATATGAAGTGCCTTTCATTGTTTGTCAGCTTATTCCA 374509 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 || || || |||| ||||| |||||||||||| |||||||| || || || || || Sbjct 374508 ATGATCGAGGTCTTGAGATAGGTCCACTTCTTCCGTGGTCCAAAACGAGGCTTCCGCTTT 374449 Query 36691 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || ||| | | ||||||||| |||||||||| || || || ||||| Sbjct 374448 CTTGTACTTTTCCCAGATGTCTGGATATTGAATGGGGAAGATGACAAA 374401 >seq7149 Length=218332 Score = 145 bits (160), Expect = 1e-29 Identities = 349/525 (66%), Gaps = 5/525 (1%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||| || |||||| || || || || || | | ||| |||||||| ||||| || Sbjct 124026 GTGAACTGGATGGGATTGGCGGCCGGCTTGGTTCTCAAATAATACATTCCGGTTTTCAGG 123967 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||| |||||||| ||||| | || | || || | | | | || Sbjct 123966 CCCTTCTTCCAACCGTAAAAGTGCATCGAGGACAGAACGCCGTAGCTGGCTTTTTCAATG 123907 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 ||||| |||| | ||| ||||| ||||| || || || | || || ||||| | | | Sbjct 123906 TGGATGTTCAAACTTTGGCTTTGGTCGATAAATGCGCCGCGATCCGCGGCCATATCGAGG 123847 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || ||||| | ||||||||| | || || || | | ||| | || || || | | Sbjct 123846 ATGACTTTTTGCGAAATTTCCCACACCGTCTTGTAGATTGCCTTCAAGTCATCAGGGATG 123787 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 | | | || || || || || || || || | ||||| ||| || | | Sbjct 123786 TCGGGGATGTTTTGTATCGAGCCGTGATTGGCTATGACTTGGTTCTTCATCGTGTCGTCC 123727 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | | ||| ||||| || | | || |||||| |||| || |||||||| || || Sbjct 123726 CACAGTCCTCTTTCGGTCAAGTCCTTGAGAAGATGCTGATTGACCACTTGAAACTCCCCG 123667 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 |||| ||||||||||||||||| ||||| || ||||| || || || ||||||||| Sbjct 123666 GACAGGACTCTCCGAGTGTAAATGTTACTAGTGTACGGCTCGACGCTTTCGTTATTTCCC 123607 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA-TTTCTAAGACC 65314 | ||||| || ||||| || || ||||| || |||| || ||| | ||||| | || Sbjct 123606 AGGATTTGGGCGGTTGAAGCCGTGGGCATTGGGGCCA-GAAGCAACGAGTTTCTTACGCC 123548 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359 | | | |||||| | |||| | |||||| ||| ||||| Sbjct 123547 ATGTTTGGCGATTTTCGCCTTTAACGCCGCCCAATCCCACAGATC 123503 Score = 127 bits (140), Expect = 3e-24 Identities = 211/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 ||||||||||| || || ||||| ||| | || || || ||| || | ||| | Sbjct 122239 TAGATGCCCTCAATGCTGTCATCGGGCATCATCAGCAGGAAGCAGGAGGATAGTTGAGGT 122180 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 66509 | || | || || || | || ||| |||||||| || | || || || | Sbjct 122179 CTGGGCGTGGCGGCGTTGAACAGAGTGGGACTGGCGTGCGTGAAGAACTTCTCTGACATG 122120 Query 66510 AGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGC 66569 | ||||| || || || ||||| || ||||| | ||| || || |||| ||| | | Sbjct 122119 AAGTTGTAGGTTTCGATTGCTGAATCAATATCTTCTCCATGGATGCCCACTGAGACCCTC 122060 Query 66570 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 66629 || ||||||||||| || |||||||| ||||| ||| || |||| | || || | Sbjct 122059 ATCAACATGTGCTGCGGCCTTTCAACAATCTTTCCGTTGATCTTCAGAAGATACGACCTC 122000 Query 66630 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAG 66689 |||| ||||| || ||||| |||||||| || || ||||| ||||||||||| |||| Sbjct 121999 TCCAGGGTTTTGAATCCAAAGTAGTTGTACGAGAAATCTCGGTCGTAAATAATGCACGAG 121940 Query 66690 TTGAG 66694 ||||| Sbjct 121939 TTGAG 121935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658105436013920