Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq4314 131 1e-25 seq5491 118 9e-22 seq4315 118 9e-22 >seq4314 Length=7604 Score = 131 bits (144), Expect = 1e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 |||| || ||||||| || || || |||||||||||||| |||||||| || ||||| Sbjct 1792 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 1851 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAA 21116 || ||||| || || || || || |||| ||||| ||||| ||||| ||| |||||| Sbjct 1852 AGCCCCATATCCGCTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 1911 Query 21117 AACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCA 21175 ||||| ||||| || ||||| || || | |||||| | | ||| | |||||||| Sbjct 1912 AACTG-CACAAGACAATGACAGGGGGGCAAAGCCATTTCAGGAATGTCTACCGGGTTCCA 1970 Query 21176 CGCGCACATAA 21186 |||||||||| Sbjct 1971 AGCGCACATAA 1981 >seq5491 Length=7586 Score = 118 bits (130), Expect = 9e-22 Identities = 143/191 (75%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 |||| || ||||||| || || || |||||||||||||| |||||||| || ||||| Sbjct 5795 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 5736 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAA 21116 || ||||| |||| || || || |||| ||||| ||||| ||||| ||| |||||| Sbjct 5735 AGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 5676 Query 21117 AACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCA 21175 ||||| ||||| | ||||| || | | |||||| | | || | | |||||||| Sbjct 5675 AACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCA 5618 Query 21176 CGCGCACATAA 21186 |||||||||| Sbjct 5617 AGCGCACATAA 5607 >seq4315 Length=6298 Score = 118 bits (130), Expect = 9e-22 Identities = 143/191 (75%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 20997 GTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCG 21056 |||| || ||||||| || || || |||||||||||||| |||||||| || ||||| Sbjct 2427 GTGATATGGGCGATCATGTAAGTGAGCAGGGCGTAGCTGGCAATGTTAAAAGGTACCCCC 2368 Query 21057 AGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAA 21116 || ||||| |||| || || || |||| ||||| ||||| ||||| ||| |||||| Sbjct 2367 AGCCCCATATCGGTTGATCTTTGATACAATTGGCACGACAGTTCCCCATTAGCAACGTAA 2308 Query 21117 AACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCA 21175 ||||| ||||| | ||||| || | | |||||| | | || | | |||||||| Sbjct 2307 AACTG-CACAAGGCAATGACAGGGGCGCAAAGCCATTTCAGGAATGT-CTCCGGGTTCCA 2250 Query 21176 CGCGCACATAA 21186 |||||||||| Sbjct 2249 AGCGCACATAA 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427733311698240